Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_O01
         (1339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 27/93 (29%), Positives = 31/93 (33%)
 Frame = +1

Query: 691  PLEAPXGXPSXSEPGRVXXITXPXXPPFXXAXXXXXVPHPRXGXXTFRWXXRPXPXPXGL 870
            P+ AP G P   +P     +  P  P    +     VP P  G         P P P   
Sbjct: 1151 PVPAPSGAPPVPKPS----VAAPPVPA--PSSGIPPVPKPAAGVP-------PVPPPSEA 1197

Query: 871  PXPPKPRXG*TPXPXGPPXXRGPXXXSSXVXKP 969
            P  PKP  G  P P  PP    P    S    P
Sbjct: 1198 PPVPKPSVGVPPVP--PPSTAPPVPTPSAGLPP 1228



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 25/96 (26%), Positives = 29/96 (30%), Gaps = 3/96 (3%)
 Frame = +1

Query: 691  PLEAPXGX-PSXSEPGRVXXITXPXXPPFXXAXXXXXVPHPRXGXXTFRWXXRPXPXPXG 867
            P+ AP    PS   P     +  P   P          P P+           P P P G
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAV-----PPVPAPSG 1119

Query: 868  LPXPPKPRXG--*TPXPXGPPXXRGPXXXSSXVXKP 969
             P  PKP       P P G P    P   +  V  P
Sbjct: 1120 APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP 1155


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +1

Query: 853  PXPXGLPXPPKPRXG*TPXPXGPPXXRGP 939
            P     P PP P     P P  PP   GP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +1

Query: 847 PXPXPXGLP-XPPKPRXG*TPXPXGPPXXRG 936
           P P P  +P  PP P  G  P P  PP   G
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,469
Number of Sequences: 5004
Number of extensions: 17478
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 735255860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)