Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_O01
(1339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 38 0.024
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 36 0.055
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.68
11_01_0066 - 536281-537196,537397-537452 31 2.1
07_03_1136 + 24218601-24218734,24218769-24219906 30 4.8
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 6.3
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 6.3
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 8.3
01_06_0146 + 26969011-26969995,26970878-26970930 29 8.3
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 37.5 bits (83), Expect = 0.024
Identities = 26/92 (28%), Positives = 32/92 (34%)
Frame = +1
Query: 679 PXRFPLEAPXGXPSXSEPGRVXXITXPXXPPFXXAXXXXXVPHPRXGXXTFRWXXRPXPX 858
P PL+AP P P + + P PP + P P + P P
Sbjct: 1129 PPPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLP----PPPP 1184
Query: 859 PXGLPXPPKPRXG*TPXPXGPPXXRGPXXXSS 954
P LP P P+ P P PP P SS
Sbjct: 1185 PPPLPSGPPPQPAPPPLPIQPPPIPPPPVPSS 1216
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 36.3 bits (80), Expect = 0.055
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 805 HPRXGXXTFRWXXRPXPXPXGLPXPPKPRXG*TPXPXGP-PXXRGPXXXSSXVXKPXR 975
+ + G F +P P P P PPKP+ G P P P P + P KP +
Sbjct: 145 YKKCGDKCFHHGPKPGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPK 202
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.68
Identities = 21/76 (27%), Positives = 25/76 (32%)
Frame = +1
Query: 697 EAPXGXPSXSEPGRVXXITXPXXPPFXXAXXXXXVPHPRXGXXTFRWXXRPXPXPXGLPX 876
E+P S + P PP A P P+ P P P P
Sbjct: 295 ESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPP 354
Query: 877 PPKPRXG*TPXPXGPP 924
PP P G +P P PP
Sbjct: 355 PPPPPKGPSPPPPPPP 370
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Frame = +1
Query: 751 TXPXXPPFXXAXXXXXVPHPRXGXXTFRWXXRPXPXPXGL--PXPPKPRXG*TPXPXGPP 924
T P P P P T R P P P P PP PR TP P PP
Sbjct: 222 TPPPSPASPPPPSTATPPPPSPTPTTTRASPTPPPIPTATVRPPPPLPRATVTPTPTTPP 281
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.9 bits (64), Expect = 4.8
Identities = 27/92 (29%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Frame = -3
Query: 938 GPRXXGGPXGXG---V*PXRGXGGXGRPX--GXGXGRXXQRNVXIPXRGXGTXXXXXASX 774
G R GG G G + P G GG RP G G G R V G G
Sbjct: 105 GARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGG 164
Query: 773 KGGKXGXVIXXTRPGSEXXGXPXGASRGKRXG 678
+GG G G P G G G
Sbjct: 165 RGGALGRPPGGGGGGGGPGRAPGGGGGGGGPG 196
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.5 bits (63), Expect = 6.3
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = +1
Query: 802 PHPRXGXXTFRWXXRPXPXPXGLPXPPKP--RXG*TPXPXGPP 924
P P T P P P G P PP P + G P P PP
Sbjct: 906 PAPSATANTASALSPPPPRPPGAPPPPPPPGKPGGPPPPPPPP 948
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.5 bits (63), Expect = 6.3
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +1
Query: 847 PXPXPXGLPXPPKPRXG*TPXPXGPPXXRGPXXXSSXVXKP 969
P P P P PP P+ P P PP ++ + KP
Sbjct: 352 PPPPPPPPPPPPPPKLNTAPKPPPPPPPPPSVPSNNNLPKP 392
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.1 bits (62), Expect = 8.3
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +1
Query: 847 PXPXPXGLPX--PPKPRXG*TPXPXGPPXXRGP 939
P P G+P PP P G P P PP GP
Sbjct: 284 PPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGP 316
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/78 (25%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Frame = +1
Query: 703 PXGXPSXSEPGRVXXITXPXXPPFXXAXXXXXVPHPRXGXXTFR----WXXRPXPXPXGL 870
P P+ P P PP + P P R P P P
Sbjct: 26 PTPHPATDPPPISPQNPTPPPPPLPASAAAPTTPSPNHSGDPSRPIPSQAPAPPPPPTAD 85
Query: 871 PXPPKPRXG*TPXPXGPP 924
P PP P TP P P
Sbjct: 86 PSPPLPHDNRTPQPRAAP 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,953,081
Number of Sequences: 37544
Number of extensions: 214834
Number of successful extensions: 654
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4201914372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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