Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_O01
(1339 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.46
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 32 1.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 30 3.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 3.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 3.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 3.2
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 871 PXPPKPRXG*TPXPXGPPXXRGPXXXSSXVXKPXR 975
P PP PR TP P PP R P S +P R
Sbjct: 139 PPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPR 173
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 853 PXPXGLPXPP-KPRXG*TPXPXGPPXXRGP 939
P P G P P +P G TP P GPP GP
Sbjct: 210 PGPQGPPGAPGQPGSGSTPGPAGPPGPPGP 239
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 31.5 bits (68), Expect = 1.4
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 847 PXPX-PXGLPXPPKPRXG*TPXPXGPPXXRGPXXXSSXVXKP 969
P P P G P PP P P P GPP R P +P
Sbjct: 238 PSPSDPPGPPGPPGPPTRRPPGPPGPPTRRPPGPPGPPTRRP 279
Score = 28.7 bits (61), Expect = 9.8
Identities = 24/80 (30%), Positives = 25/80 (31%)
Frame = +1
Query: 700 APXGXPSXSEPGRVXXITXPXXPPFXXAXXXXXVPHPRXGXXTFRWXXRPXPXPXGLPXP 879
+P G PS P P PP P P P P G P P
Sbjct: 205 SPSGPPSPG-PVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGP 263
Query: 880 PKPRXG*TPXPXGPPXXRGP 939
P R P P GPP R P
Sbjct: 264 PTRRP---PGPPGPPTRRPP 280
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 30.3 bits (65), Expect = 3.2
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 853 PXPXGLPXPP-KPRXG*TPXPXGPPXXRGP 939
P P G P P +P G P P GPP GP
Sbjct: 212 PGPQGPPGAPGQPGSGNAPGPAGPPGPAGP 241
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 3.2
Identities = 27/102 (26%), Positives = 29/102 (28%), Gaps = 2/102 (1%)
Frame = +1
Query: 844 RPXPXPX-GL-PXPPKPRXG*TPXPXGPPXXRGPXXXSSXVXKPXRXXXPXXLPXXXXXX 1017
RP P P G+ P PP P G TP P G P P S P P P
Sbjct: 286 RPPPPPSSGMWPPPPPPPPGRTPGPPGMP-GMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 344
Query: 1018 GXSXSTXXXXXXXAXXXFXPXXPTPQXSLXNXGGAPXPTXXP 1143
G A P P + G P P
Sbjct: 345 GGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 386
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 3.2
Identities = 29/97 (29%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Frame = +1
Query: 676 IPXRFPLEAPXGXPSXSEPGR--VXXITXPXXPP--FXXAXXXXXVPHPRXGXXTFRWXX 843
IP P + PS S G + IT PP P P G
Sbjct: 683 IPLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGP 742
Query: 844 RPXPXPXGLPX------PPKPRXG*TPXPXGPPXXRG 936
P P P GLP PP P G P P PP G
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Score = 28.7 bits (61), Expect = 9.8
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Frame = +1
Query: 802 PHPRXGXXTFRWXXRPXPXPXGLPX------PPKPRXG*TPXPXGPPXXRGP 939
P P G P P P GLP PP P G P GPP P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 3.2
Identities = 29/97 (29%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Frame = +1
Query: 676 IPXRFPLEAPXGXPSXSEPGR--VXXITXPXXPP--FXXAXXXXXVPHPRXGXXTFRWXX 843
IP P + PS S G + IT PP P P G
Sbjct: 683 IPLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGP 742
Query: 844 RPXPXPXGLPX------PPKPRXG*TPXPXGPPXXRG 936
P P P GLP PP P G P P PP G
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Score = 28.7 bits (61), Expect = 9.8
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Frame = +1
Query: 802 PHPRXGXXTFRWXXRPXPXPXGLPX------PPKPRXG*TPXPXGPPXXRGP 939
P P G P P P GLP PP P G P GPP P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 3.2
Identities = 27/102 (26%), Positives = 29/102 (28%), Gaps = 2/102 (1%)
Frame = +1
Query: 844 RPXPXPX-GL-PXPPKPRXG*TPXPXGPPXXRGPXXXSSXVXKPXRXXXPXXLPXXXXXX 1017
RP P P G+ P PP P G TP P G P P S P P P
Sbjct: 296 RPPPPPSSGMWPPPPPPPPGRTPGPPGMP-GMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 354
Query: 1018 GXSXSTXXXXXXXAXXXFXPXXPTPQXSLXNXGGAPXPTXXP 1143
G A P P + G P P
Sbjct: 355 GGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 396
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 3.2
Identities = 29/97 (29%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Frame = +1
Query: 676 IPXRFPLEAPXGXPSXSEPGR--VXXITXPXXPP--FXXAXXXXXVPHPRXGXXTFRWXX 843
IP P + PS S G + IT PP P P G
Sbjct: 266 IPLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGP 325
Query: 844 RPXPXPXGLPX------PPKPRXG*TPXPXGPPXXRG 936
P P P GLP PP P G P P PP G
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 362
Score = 28.7 bits (61), Expect = 9.8
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Frame = +1
Query: 802 PHPRXGXXTFRWXXRPXPXPXGLPX------PPKPRXG*TPXPXGPPXXRGP 939
P P G P P P GLP PP P G P GPP P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,343,417
Number of Sequences: 27780
Number of extensions: 150775
Number of successful extensions: 582
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3756810758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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