Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_N24
         (1160 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    31   0.40 
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    29   1.2  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    28   2.2  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    27   6.6  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   6.6  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    27   6.6  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    27   6.6  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 311  LAFLWPIKKSKEPIDQ--EKLKKLSVIDDSDELFENGHYEECYNLLKNYEENQ 463
            L FL  IK  K  + +  +KL K  V + ++   ENG YEE + + K + +++
Sbjct: 1023 LLFLTAIKADKSRVMEYIDKLDKYDVDEIAEIAIENGLYEEAFRIYKIHNKHE 1075


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 320 LWPIKKSKEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLK 445
           LW +          K  K  V+D++D L +  H+EE   LL+
Sbjct: 253 LWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLE 294


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +2

Query: 632 ILDAKSHHNGIKERIQQLENVKKHMDLAVT 721
           +++ +  HN I +R+Q++E++ +  +L VT
Sbjct: 724 LVEERERHNAISKRLQEIESLYRDRELLVT 753


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +2

Query: 182 NLYPILTKVFCFSSDLLKPNRIKVAREITQIQFPKNLIFISTGLAFLWPIKKSKEPIDQE 361
           N  P+ T+   FSS L KP+   +   ++Q   PKN +        L  +  +      +
Sbjct: 495 NSSPVQTRTSLFSSRLSKPSN-PIVSSVSQANAPKNALHSMPSPTSLANLPSNLSDTQYK 553

Query: 362 KLKKLSVID 388
           KL  L +++
Sbjct: 554 KLYNLYLVE 562


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 197 LTKVFCFSSDLLKPNRIKVAREITQIQFPKNLIFISTGLAF 319
           LT+VFCF  D   P   K+  EI  I    N+  I  G  F
Sbjct: 353 LTRVFCFLIDTPYPQFEKIPLEIYSIFAAINVYIIELGGKF 393


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +2

Query: 302 STGLAFLWPIKKSKEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLKNYEENQDIEIQW 481
           S G+A L  + K+       ++ +L  +   DE+ +   YE+ Y  +K    N    I  
Sbjct: 398 SNGMAILTELAKASSQSIPTRVLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYGPLIDI 457

Query: 482 RICRAL 499
           +I R++
Sbjct: 458 KIPRSI 463


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 955

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +1

Query: 853  CFRILS*G*N-YTTKIYSVNLLRXGICY--HKLGKEDXAKYT*NLQQVTXQINDDPYPI 1020
            CF IL+   +    K+++   LR  I Y  H+L KE   ++  +L Q+     D P P+
Sbjct: 40   CFSILNQDDSSIEAKLFAAQTLRQKIVYDFHQLPKETHIEFRNSLLQLFLAAKDSPRPL 98


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 461 QDIEIQWRICRALYNMAKESKYNNAKK 541
           Q IEIQW I  +LY +AK  K    KK
Sbjct: 44  QKIEIQWSITDSLY-IAKYGKLKKTKK 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,151,312
Number of Sequences: 5004
Number of extensions: 87985
Number of successful extensions: 274
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)