Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_N24
(1160 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 31 1.3
09_03_0043 + 11851889-11852790,11853388-11853877 31 1.3
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 31 1.7
02_04_0421 - 22756903-22757384,22757585-22758047 29 5.3
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900... 29 9.3
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479... 29 9.3
07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410... 29 9.3
>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 31.5 bits (68), Expect = 1.3
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +2
Query: 332 KKSKEPIDQEKLKK-LSVIDD----SDELFENGHYEECYNLLKNYEENQDIEIQWRICRA 496
K K PI +E L L ++ D S + +E LKN+ N+D +++ + C A
Sbjct: 1014 KLLKGPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSA 1073
Query: 497 LYNMAKESKY 526
+ NM + S Y
Sbjct: 1074 IGNMCRHSSY 1083
>09_03_0043 + 11851889-11852790,11853388-11853877
Length = 463
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +2
Query: 395 DELFENGHYEECYNLLKNYEENQDIEIQWRICRA--LYNMAKESKYNNAKKKDFIFEAYE 568
D L+ CY + ++EN+ W++ A L ++ ES+ +N K +
Sbjct: 182 DPLYPKKPQTACYEMDAPWQENRKSRPWWQVAEADGLASVVAESEMHNVGKNELPRPTQR 241
Query: 569 IISKHLNNNEN 601
LNN+EN
Sbjct: 242 AHGSKLNNHEN 252
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 31.1 bits (67), Expect = 1.7
Identities = 16/73 (21%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +2
Query: 335 KSKEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLKNYEENQDIEI---QWRICRALYN 505
++KE + EK+K+LSV+ ++ + NG ++E N+ + E+++ + + W + +
Sbjct: 636 QAKELVASEKIKELSVLANAKDGATNGSHKEESNVKGDSEDDEPVMVVAKMWENSKVTDD 695
Query: 506 MAKESKYNNAKKK 544
+ + K N+ + +
Sbjct: 696 ASSKEKGNDGESE 708
>02_04_0421 - 22756903-22757384,22757585-22758047
Length = 314
Score = 29.5 bits (63), Expect = 5.3
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +2
Query: 413 GHYEECYNLLKNYEENQDIEIQWRICRA---LYNMAKESKYNNAKKKDFIFEAYEIISKH 583
G ++ + +LK N D + RI +A L+N K+S+ N + ++ I+ KH
Sbjct: 215 GIVKKQWKILKEIPHNDDDRVHTRIIKAAFALHNFRKDSRDVNYRHNHPLYNNNPIVQKH 274
Query: 584 LNNNENNFAVHKWYAL 631
+ + +A ++ A+
Sbjct: 275 PSFSHMYYATNREQAM 290
>10_05_0085 -
9005539-9005922,9006207-9006463,9006707-9006883,
9007349-9007490,9007814-9007904,9009024-9010942
Length = 989
Score = 28.7 bits (61), Expect = 9.3
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Frame = +2
Query: 302 STGLAFLWPIKKSKEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLKN-------YEEN 460
S G+ F+ P+K S E E+ K +S + +S L + +Y N +N Y+
Sbjct: 89 SKGITFMSPLKISSEERAGEEWK-ISDLIESKTLSQPENYISYQNSKRNTSIRFINYKPR 147
Query: 461 --QDIEIQWRICRALYNMAKE-SKYNNAKKKDFIFEAYEIISKHLNNNENNFAVHKWYAL 631
D+E + + N S++ ++ + YE K +N NN +W
Sbjct: 148 TTDDLETEASDRNIIDNRRHSVSEFMEKLDQESEIKYYENKLKEINEEYNNSMKCEW-TK 206
Query: 632 ILDAKSHHNGIKERIQQLENVKKHMDLAVTLNPNDATTLHML 757
I D + + KE + +++ VKK+ D+AV + N T + +
Sbjct: 207 IRDKELYF--YKE-LARVKKVKKNEDMAVEIFKNQETKIEQI 245
>07_01_0641 -
4790704-4790720,4790824-4791296,4791707-4792023,
4792094-4792423
Length = 378
Score = 28.7 bits (61), Expect = 9.3
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 344 EPIDQEKLKKLSVIDDSDELFENGHY-EECYNLLKNYEENQDI 469
EPI +EK +K D+D + E G E CY + +DI
Sbjct: 328 EPIVEEKFEKFEWDSDNDNVLEPGSMRENCYIYFLGFHPYKDI 370
>07_01_0551 -
4105721-4105774,4106090-4106159,4106880-4106945,
4106985-4107479,4107491-4107672,4107728-4108222
Length = 453
Score = 28.7 bits (61), Expect = 9.3
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +2
Query: 170 SXYKNLYPILTKVFCFSSDLLKPNRIKVAREITQIQFPKNLIFISTGLAFLWPIKKSKEP 349
S +++ + FC+ S +L + + + ++ K LIF S W ++K +
Sbjct: 377 SLIHHIFTCCYRQFCYISSVLYGDLVSGSAKVQTCSRNKGLIFCSESEPEWWAMRKYRYG 436
Query: 350 IDQEK 364
+D EK
Sbjct: 437 LDTEK 441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,506,532
Number of Sequences: 37544
Number of extensions: 473610
Number of successful extensions: 1101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3538190388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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