Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_N21
(1239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 40 0.001
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.009
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.25
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.33
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 9.4
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 39.5 bits (88), Expect = 0.001
Identities = 44/181 (24%), Positives = 49/181 (27%), Gaps = 2/181 (1%)
Frame = +3
Query: 471 SPPXXPXAPGXPXGXRGXXPPKGGXXVXXKTGXNPXKKXXTKGPXKXQXPKKXPXXGXXP 650
+P P P P G V +G P K P + P
Sbjct: 1059 APSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPS 1118
Query: 651 XXPPPXXXSKXXPPNXXGXNPXGIXKXPXXPPGXPPRXPPXPXXAVXRKPXXLXPSGXGG 830
PP S PP P G P PP P V KP P
Sbjct: 1119 GAPPVPKPSVAAPPVPV---PSGAPPVPKPSVAAPPVPAPSGAPPVP-KPSVAAPPVPAP 1174
Query: 831 PSXNPXXXVSXXGXGPPPXPGXXXKPPXXXPNRG--PLPGKKMXXXPXPXXXXXXPPGXX 1004
S P V G PP P PP P+ G P+P P P PP
Sbjct: 1175 SSGIP--PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP-PPSTAPPVPTPSAGLPPVPV 1231
Query: 1005 P 1007
P
Sbjct: 1232 P 1232
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.3 bits (80), Expect = 0.009
Identities = 33/134 (24%), Positives = 35/134 (26%), Gaps = 5/134 (3%)
Frame = +2
Query: 476 PPXXPXPRPXGGGKGXXPPXGGKXGXPXNRGKPXKKXXXXRXXXXXXXXXXXXXXXXPXX 655
PP P PR G PP G P P R P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPP---PPRSAPSTGRQPPPLSSSRAVSN---PPA 390
Query: 656 PPPXXXXXKXXPQXXGGKPXXDXKXPGXSPRKXPPXPPXSXPGRXPKTXP-----PXPLX 820
PPP G P +P PP P S P P + P PL
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
Query: 821 XGGPFPKPXPXGXP 862
P P P G P
Sbjct: 451 PSAPIAPPLPAGMP 464
Score = 33.9 bits (74), Expect = 0.047
Identities = 42/187 (22%), Positives = 51/187 (27%), Gaps = 8/187 (4%)
Frame = +3
Query: 471 SPPXXPXAPGXPXGXRGXXPPKGGXXVXXKTGXNPXKKXXTKGPX-KXQXPKKXPXXGXX 647
+PP P PP+ V N K P +
Sbjct: 252 APPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRP 311
Query: 648 PXXPPPXXXSKXXPPNXXGXNPXGIXKXPXXP----PGXPPRXPPXPXXAVXRKPXXLXP 815
P PPP ++ PP G + + P P G P PP A P P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP-LPPQGRSAPPPPPPRSAP 370
Query: 816 S-GXGGPSXNPXXXVSXXGXGPPPXPGXXXK--PPXXXPNRGPLPGKKMXXXPXPXXXXX 986
S G P + VS PP PG PP +R P P
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPS 430
Query: 987 XPPGXXP 1007
PP P
Sbjct: 431 LPPSAPP 437
Score = 31.5 bits (68), Expect = 0.25
Identities = 33/155 (21%), Positives = 41/155 (26%), Gaps = 1/155 (0%)
Frame = +3
Query: 462 PXRSPPXXPXAPGXPXGXRGXX-PPKGGXXVXXKTGXNPXKKXXTKGPXKXQXPKKXPXX 638
P PP A P +G PP TG P ++ P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 639 GXXPXXPPPXXXSKXXPPNXXGXNPXGIXKXPXXPPGXPPRXPPXPXXAVXRKPXXLXPS 818
P PP S+ P + P PP PP PP ++ P
Sbjct: 398 RSAPALPPLGNASRTSTPP--------VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPL 449
Query: 819 GXGGPSXNPXXXVSXXGXGPPPXPGXXXKPPXXXP 923
P P + PP P PP P
Sbjct: 450 PPSAPIAPPLP--AGMPAAPPLPPAAPAPPPAPAP 482
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.25
Identities = 22/61 (36%), Positives = 23/61 (37%)
Frame = -2
Query: 923 WGXXGGFXXXPRXGGXTXPRXGXXXGGVXGRAPXSXGXKXGXFSXNGXXGXXGGPGGXSG 744
+G GGF G G GG G P G G F G G GGPGG G
Sbjct: 207 FGGFGGFGGEGHHHGGHGG-FGGGPGGFEG-GPGGFGGGPGGFG-GGLGGFGGGPGGFGG 263
Query: 743 G 741
G
Sbjct: 264 G 264
Score = 29.5 bits (63), Expect = 1.0
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Frame = -2
Query: 848 GGVXGRAPXSXGXKXGXFSXNGXXGXXGGPGGXSGGXXRXFXNPXGV--XPXXIGGXXFX 675
GG G P G G G GG GG GG P G P GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 674 XXXGGGG 654
G GG
Sbjct: 254 FGGGPGG 260
Score = 26.6 bits (56), Expect = 7.1
Identities = 28/86 (32%), Positives = 28/86 (32%)
Frame = -2
Query: 968 GGXXXHFFPG*RXPVWGXXGGFXXXPRXGGXTXPRXGXXXGGVXGRAPXSXGXKXGXFSX 789
GG F G P G GGF GG G GG G P G F
Sbjct: 187 GGGFGGFGGGSGGPPPGP-GGFGGFGGFGGEGHHHGGH--GGFGG-GPGGFEGGPGGFG- 241
Query: 788 NGXXGXXGGPGGXSGGXXRXFXNPXG 711
G G GG GG GG P G
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFGGGPGG 267
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.33
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +2
Query: 731 PGXSPRKXPPXPPXSXPGRXPKTXPPXPLXXGGPFPKPXP 850
P +P P PP G P PP + GP P P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 30.3 bits (65), Expect = 0.58
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Frame = +2
Query: 749 KXPPXPPXSX----PGRXPKTXPPXPLXXGGPFPKPXPXG 856
K PP PP + P P PP GGP P P P G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +2
Query: 419 KPPXPXXXXXXFWXPXPFPPPXXPXPRPXGGGKGXXPPXGGKXG 550
K P P P P P P P P P GG PP G G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIP-VPPPAPIMGGPPPPPPPPGVAG 772
Score = 26.6 bits (56), Expect = 7.1
Identities = 22/75 (29%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Frame = +2
Query: 647 PXXPPPXXXXXKXXPQXXGGKPXXDXKXPGXSPRKXPPXPPXSXPGRXPKTXPPXP--LX 820
P PPP P P G P PP PP G P PP P +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIM--GGPP---PPPPPPGVAGAGPPPPPPPPPAVS 786
Query: 821 XGGP-FPKPXPXGXP 862
GG + P P P
Sbjct: 787 AGGSRYYAPAPQAEP 801
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 1.0
Identities = 24/103 (23%), Positives = 29/103 (28%), Gaps = 3/103 (2%)
Frame = +3
Query: 591 TKGPXKXQXPKKXPXXGXX-PXXPPPXXXSKXXP--PNXXGXNPXGIXKXPXXPPGXPPR 761
T P + P P P PP S P P +P P P PP+
Sbjct: 141 TSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPK 200
Query: 762 XPPXPXXAVXRKPXXLXPSGXGGPSXNPXXXVSXXGXGPPPXP 890
PP P PS P+ + S P P
Sbjct: 201 VPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGP 243
Score = 28.7 bits (61), Expect = 1.8
Identities = 27/110 (24%), Positives = 31/110 (28%), Gaps = 1/110 (0%)
Frame = +3
Query: 597 GPXKXQXPKKXPXXGXXPXXP-PPXXXSKXXPPNXXGXNPXGIXKXPXXPPGXPPRXPPX 773
G K + K P P PP S+ PP P PP P PP
Sbjct: 108 GMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPT-------SAPPRPSIPPPSPASAPPI 160
Query: 774 PXXAVXRKPXXLXPSGXGGPSXNPXXXVSXXGXGPPPXPGXXXKPPXXXP 923
P A P+ P +P S PP P P P
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 741 PPGXPPRXPPXPXXAVXRKPXXLXPSG 821
PPG PP PP P +P P G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +3
Query: 618 PKKXPXXGXXPXXPPPXXXSKXXPPNXXGXNPXGIXKXPXXPPGXPPRXPPXPXXAVXRK 797
P P PP PP P P PP PP PP P +
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP--PPLPASSAPSV 1743
Query: 798 P 800
P
Sbjct: 1744 P 1744
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.149 0.511
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,077
Number of Sequences: 5004
Number of extensions: 32809
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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