Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_N21
         (1239 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +3

Query: 816 SGXGGPSXNPXXXVSXXGXGPPPXPGXXXKPPXXXPNRGP 935
           SG  GP  +P         G PP P     PP   P   P
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGSPPNPS-QGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +3

Query: 657 PPPXXXSKXXPPNXXGXNPXGIXKXPXXPPGXPPRXPP 770
           P P       P      +P    + P  PPG PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGP--PPGGPPGAPP 56


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 506 GGGKGXXPPXGGKXGXPXNRGK 571
           G GKG     GG  G   NRG+
Sbjct: 79  GRGKGRGHGKGGSRGRGGNRGR 100


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 494  PRPXGGGKGXXPPXG 538
            P+P  GGKG  P  G
Sbjct: 1024 PKPATGGKGTRPKRG 1038


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.149    0.511 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,948
Number of Sequences: 438
Number of extensions: 6981
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42262176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)