Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_N18
(1199 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 465 e-132
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 48 3e-06
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 47 5e-06
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 37 0.006
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 34 0.034
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 32 0.14
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 30 0.56
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 29 1.7
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 29 1.7
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 29 1.7
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 28 3.0
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 28 3.0
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 3.9
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 6.8
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 26 9.0
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 9.0
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 9.0
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 9.0
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 26 9.0
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 465 bits (1147), Expect = e-132
Identities = 203/307 (66%), Positives = 261/307 (85%)
Frame = +2
Query: 128 FKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 307
FK I +P F+D++LS+TQRKTPTV+ +KISRIRGFY RKVK+TQ ++L I
Sbjct: 6 FKNITPIPDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTITEKLDSI 65
Query: 308 IQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYR 487
+QEFPKL+D+HPF+ADL+N+LYD+DH K+ L QL+TA+HL++NVA+DY+RLLKYGDSLYR
Sbjct: 66 LQEFPKLNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLYR 125
Query: 488 CKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFI 667
CKQLKRAALGRMATI+KRQ ++L +LEQVRQHL+RLP+IDP TRT+++CG+PNVGKSSF+
Sbjct: 126 CKQLKRAALGRMATIIKRQKSSLEFLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFM 185
Query: 668 NKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAVTALA 847
NK+TRA V+VQPYAFTTKSL+VGH DYKYLRWQVIDTPGILDHPLE+ N IEMQ++TA+A
Sbjct: 186 NKVTRAQVDVQPYAFTTKSLFVGHFDYKYLRWQVIDTPGILDHPLEQMNTIEMQSITAMA 245
Query: 848 HLRAAILYFIDPSEQCGHSIEDQISLFESIKPLFTSKPLIVVLNKMDVVKPEXLSXSKKQ 1027
HLR+A+LYF+D SE CG+S+ Q+ L+ SIKPLF +K I+VLNK+D ++PE L ++
Sbjct: 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQE 305
Query: 1028 XLDDLTE 1048
L + +
Sbjct: 306 LLQTIID 312
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 47.6 bits (108), Expect = 3e-06
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = +2
Query: 620 TIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHP 799
T+ GFP+VGKS+ + ++T E Y FTT + G Y + Q++D PGI++
Sbjct: 65 TVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGIIEGA 124
Query: 800 LEERNVIEMQAVTALAHLRAAILYFIDPSEQCGHS--IEDQISLF 928
+ R + V +A I +D + H IE+++ F
Sbjct: 125 KDGRG--RGKQVITVARTCNLIFIVLDVLKPMSHKRIIEEELEGF 167
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 47.2 bits (107), Expect = 5e-06
Identities = 29/89 (32%), Positives = 46/89 (51%)
Frame = +2
Query: 623 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHPL 802
+ GFP+VGKS+ ++ IT+ Y FTT + G +Y Q++D PGI++
Sbjct: 65 VAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGIIEGAS 124
Query: 803 EERNVIEMQAVTALAHLRAAILYFIDPSE 889
+ R QAV+A A IL +D ++
Sbjct: 125 QGRG--GRQAVSA-ARTADLILMVLDATK 150
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 36.7 bits (81), Expect = 0.006
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Frame = +2
Query: 629 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVG------HTDYKYLRWQVIDTPGIL 790
+ G PN GKS+ +N +T + +V Y FTT +G D+ ++++ D PGI+
Sbjct: 241 LVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSFQYRLADIPGII 300
Query: 791 DHPLEERNVIEMQAVTALAHLRAA--ILYFID-------PSEQCGHSIEDQISLFESIKP 943
+ + + L H+ A + ID P++Q + D+++ +E K
Sbjct: 301 KGASDGKGL----GYDFLRHVERAKMLCLVIDINPKAKIPADQAFQLLWDELNKYE--KN 354
Query: 944 LFTSKPLIVVLNKMDVVKPEXL 1009
L +K +V+ NK D + L
Sbjct: 355 LI-NKVALVIANKADTAAEQDL 375
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 34.3 bits (75), Expect = 0.034
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Frame = +2
Query: 623 IIICGFPNVGKSSFINKITRADVE-VQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI-LDH 796
+ I G N GKSS IN + + V P + TT+ D + DT G+
Sbjct: 242 VAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTAGLRKGE 301
Query: 797 PLEERNVIEMQAVTALAHLRAAILYFIDPSEQCGHSIED---QISLFESIKP-LFTSKPL 964
++E I ++ A A + + F+ P HS + Q + E+IK L KP+
Sbjct: 302 DVQEIEKIGIEIAKARAE-ESQLTLFVFPINY--HSFSESLKQSEILETIKDCLRQRKPI 358
Query: 965 IVVLNKMDVV 994
++NK+D V
Sbjct: 359 HFLINKVDCV 368
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 32.3 bits (70), Expect = 0.14
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 563 LEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADV-EVQPYAFTTKS-LYVG 736
L Q+ + A L S D ++ + GFPN GKSS IN + + V V P TK YV
Sbjct: 294 LIQILRQFASLHS-DKKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPGETKVWQYVA 352
Query: 737 HTDYKYLRWQVIDTPGIL 790
+L ID PGI+
Sbjct: 353 LMKRIFL----IDCPGIV 366
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 30.3 bits (65), Expect = 0.56
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +2
Query: 755 LRWQVIDTPGILDHPLEERNVIEMQAVTALAHLRAAILYFID--PSEQCGHS-IEDQISL 925
L +Q + ++DHP +N + M+ +TAL +L L + +E G+S + D IS
Sbjct: 53 LSYQFVFDKSLMDHPKFLKNQVFMEVLTALQNLPGMALLTVPWFLAELHGYSYLYDNISD 112
Query: 926 FESIKPLFTSKPLIVVLNKMDV 991
+ +K S PL V+ + +
Sbjct: 113 Y-GLKYFLCSLPLFVMFSDFGI 133
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 620 TIIICGFPNVGKSSFINKI 676
T+ + G+PNVGKSS IN +
Sbjct: 271 TVGVIGYPNVGKSSVINAL 289
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 28.7 bits (61), Expect = 1.7
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 24/164 (14%)
Frame = +2
Query: 623 IIICGFPNVGKSSFINKITRA-DVEVQP---YAFTTKSLYVGHTDYKYLRWQVIDTPGIL 790
+I+ G ++GK++F+N ++ D +P F + D K+ ++DTPG
Sbjct: 121 LIVVGESSLGKTTFVNSFLQSNDTNFRPKKTMDFVEHKATLSDGDQKF-NLTIVDTPGFG 179
Query: 791 D----------------HPLEE--RNVIEMQAVTALAHLRA-AILYFIDPSEQCGHSIED 913
D H L +N ++M T+ R L+FI+P+ GH ++
Sbjct: 180 DKSDNSNCWRPIATNLLHRLNAYFQNEVKMDRETSEIDSRIHGCLFFINPN---GHRLQP 236
Query: 914 -QISLFESIKPLFTSKPLIVVLNKMDVVKPEXLSXSKKQXLDDL 1042
+I + + I +I V+ K D + + L+ KK+ + D+
Sbjct: 237 LEIYIMKKIDQFVN---IIPVIGKADTMTSDELNHFKKRVIADM 277
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 28.7 bits (61), Expect = 1.7
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +2
Query: 548 ANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRA-DVEVQPYAFTTKS 724
A L LE + + A T + G+PNVGKSS IN + + V V TK
Sbjct: 279 ATLKVLEGIFEKFASTLPDGKTKMTFGLVGYPNVGKSSTINALVGSKKVSVSSTPGKTKH 338
Query: 725 LYVGHTDYKYLRWQVIDTPGIL 790
+ K ++D PG++
Sbjct: 339 FQTINLSEKV---SLLDCPGLV 357
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 629 ICGFPNVGKSSFINKITRA 685
I G PNVGKS+F IT++
Sbjct: 25 IVGMPNVGKSTFFRAITKS 43
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 491 KQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICG 637
K LKR LG AT + GAN+ H P DP +T+++ G
Sbjct: 53 KILKRTTLGLFATAVVLYGANVYRFRHPDPH---QPLPDPSKKTLVVLG 98
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 134 KIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGF 250
KI VV + + + S+ QRK +++ KH I + GF
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGF 1708
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 722 SLYVGHTDYKYLRWQVIDTPGILDHPL 802
S YV +YK L W +D + DHPL
Sbjct: 720 SFYVERDNYKLL-WTQLDLLAVTDHPL 745
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 9.0
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +2
Query: 110 KMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIR-KVKYTQQNF 286
K++ FK IA + F+D +S R T + +++ GF +K + F
Sbjct: 547 KINTTTFKTIANNKSVDAFLDDCVSFFSRPEMT---QDSQLNASSGFLTNFSLKDSTDRF 603
Query: 287 HDRLS--RIIQEFPKLDDVHPFYADLMNVL 370
+ LS ++ + F K+DD + Y+D+ + L
Sbjct: 604 YKVLSYEKVSERFVKIDDSYITYSDIFSPL 633
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 9.0
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +2
Query: 230 ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQL 409
+S IR R+ K + LSR I + KLD V PF +M +L D+ + + + L
Sbjct: 437 LSTIRHVNTRESKINALSLVQILSRNICDESKLDTVLPF---VMTLLRDQ-YADVRISAL 492
Query: 410 NTARHLIDNV 439
T L+ NV
Sbjct: 493 ITITRLVSNV 502
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 623 IIICGFPNVGKSSFINKITRAD 688
++ICG VGKSS I+ + + D
Sbjct: 6 VVICGDQGVGKSSLISALIQED 27
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 635 GFPNVGKSSFINKITRADVEVQPYAFTT 718
G P+ GKS+ +N +T A + + FTT
Sbjct: 11 GKPSSGKSTMLNALTDATAKTGNFPFTT 38
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 9.0
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +2
Query: 677 TRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAVTALAHLR 856
T+ V+ P SL VG +++ + W + + +PL IE A A ++
Sbjct: 230 TKRTVQFSPQYRVLLSLLVGEGNHEPINWDIENAIQKYFNPL-----IEQLASLAKLNIE 284
Query: 857 AAILYFIDPSE 889
I YF++ +E
Sbjct: 285 TQIQYFVEDAE 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,643,925
Number of Sequences: 5004
Number of extensions: 97604
Number of successful extensions: 299
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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