Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_N18
         (1199 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    29   0.081
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   3.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   7.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   7.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   7.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   9.3  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 0.081
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 778 PWNPGSSIGRTQCYRNASRHSFGSSQSC 861
           P++P S IGR +  +  S + +GSS  C
Sbjct: 143 PYSPNSKIGRDELSQPGSLNGYGSSDGC 170


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 803 EERNVIEMQAVTALAHLRAAILYFIDPSEQ 892
           EE    E      L HLRAA+L   +PS +
Sbjct: 53  EETEDAEDTQTLNLKHLRAAVLVLTNPSNE 82


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 678 HVLMWKCSPMHLPQRVCMLVILITNI 755
           H ++  CS       +CML++L+ N+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 678 HVLMWKCSPMHLPQRVCMLVILITNI 755
           H ++  CS       +CML++L+ N+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 678 HVLMWKCSPMHLPQRVCMLVILITNI 755
           H ++  CS       +CML++L+ N+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANL 103


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 521 CDPEPHVSAVCTDT 480
           CD  P +S VC DT
Sbjct: 58  CDMSPLLSLVCADT 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 307,657
Number of Sequences: 438
Number of extensions: 6386
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40970340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)