Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_N15
         (1220 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.43 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   9.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 420 PPPXGXXGXXXGXPPPPPP 476
           PPP G  G     PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 30.3 bits (65), Expect = 0.57
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 420 PPPXGXXGXXXGXPPPPPPXKP 485
           PPP    G     PPPPPP  P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +3

Query: 420 PPPXGXXGXXXGXPPPPPPXKPXXPGFXGGXXVXP 524
           PPP        G  PPPPP  P      G     P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -1

Query: 455 PXXXXPXPXGXGXFXXXXKPPPPPPXXXKKK 363
           P    P P   G       PPPPPP   KK+
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -1

Query: 455 PXXXXPXPXGXGXFXXXXKPPPPPPXXXKKK 363
           P    P P     F    +PPPPPP    KK
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -3

Query: 825 PPXXXGXXGXXFFFXPGXXXGGXXGGFXGGXPGXFXXPXG 706
           PP   G  G   F   G   GG  GGF GG  G    P G
Sbjct: 201 PPGPGGFGGFGGFGGEGHHHGGH-GGFGGGPGGFEGGPGG 239



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 19/49 (38%), Positives = 19/49 (38%)
 Frame = -3

Query: 840 GFXEXPPXXXGXXGXXFFFXPGXXXGGXXGGFXGGXPGXFXXPXGXXPP 694
           GF   P    G  G  F   PG   GG  GGF GG  G    P G   P
Sbjct: 225 GFGGGPGGFEGGPGG-FGGGPGGFGGGL-GGFGGGPGGFGGGPGGHGGP 271



 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 491 GXGFXXGGXGGGPXXXXPXPXGXGXF 414
           G GF  GG GGG     P P G G F
Sbjct: 187 GGGF--GGFGGGSGGPPPGPGGFGGF 210


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 423 PPXGXXGXXXGXPPPPPPXKPXXPG 497
           PP G        PPPPPP +    G
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAG 349



 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
 Frame = +3

Query: 423 PPXGXXGXXXGXP--PPPPPXKPXXPGFXGGXXVXPP 527
           PP        G P  PP PP  P  P    G    PP
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 414 KXPPPXGXXGXXXGXPPPPPPXKP 485
           K   P        G PPPPPP  P
Sbjct: 291 KTQAPSSGDSANGGLPPPPPPPPP 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.151    0.508 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,472
Number of Sequences: 5004
Number of extensions: 31132
Number of successful extensions: 221
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)