Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_N14
         (1242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.3  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    27   5.4  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   5.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   6.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 904 PXXXXPLPPXXGXXFXXXKPXPPPPXXXKXKRN 806
           P    P PP  G       P PPPP   K ++N
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKN 38


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +1

Query: 163 IPLPVLKVSLIXIQSSFYYVST*CXARHHHPKXLELYSSVPXYXXXXXXXCYIMD---YG 333
           +P  +L VSL  I SSF  +S    +  +H   L  +SS            Y++    + 
Sbjct: 96  VPSKMLGVSLAAISSSFGEISFLHLSSRYHSVSLPCWSSGTGLAGLFGASSYLVMTTWFN 155

Query: 334 FSLEXVNFI*SFLP 375
           FS+     I SFLP
Sbjct: 156 FSVRSTLIISSFLP 169


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/50 (32%), Positives = 19/50 (38%)
 Frame = +3

Query: 642 RGG*XGPKXKKXXGXXGXXXXKRGGKKGXIGXXGXXXGXXGTXXRGKKKV 791
           RGG  G +     G  G     RGG+ G  G  G   G  G    G K +
Sbjct: 25  RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKVI 74


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.4 bits (48), Expect(2) = 6.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 846 PPPPPPXP 823
           PPPPPP P
Sbjct: 776 PPPPPPPP 783



 Score = 21.4 bits (43), Expect(2) = 6.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 849 NPPPPPP 829
           +PPPPPP
Sbjct: 731 SPPPPPP 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,084,472
Number of Sequences: 5004
Number of extensions: 49273
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)