Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_N14
(1242 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.14
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.14
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 0.33
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 0.33
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 25 2.7
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 25 3.3
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 24 4.3
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 24 4.8
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 29 9.0
AF026210-3|AAB71286.3| 382|Caenorhabditis elegans Hypothetical ... 29 9.0
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 24 9.6
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 34.7 bits (76), Expect = 0.14
Identities = 18/66 (27%), Positives = 19/66 (28%)
Frame = -3
Query: 1027 PXXPPXXXXXXXPPPXXXXXPXPPXXXXXXXXXXXXXXGXGPXXXXPLPPXXGXXFXXXK 848
P P PPP P PP G P PP G +
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGM 347
Query: 847 PXPPPP 830
P PPPP
Sbjct: 348 PPPPPP 353
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 34.7 bits (76), Expect = 0.14
Identities = 18/66 (27%), Positives = 19/66 (28%)
Frame = -3
Query: 1027 PXXPPXXXXXXXPPPXXXXXPXPPXXXXXXXXXXXXXXGXGPXXXXPLPPXXGXXFXXXK 848
P P PPP P PP G P PP G +
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGM 357
Query: 847 PXPPPP 830
P PPPP
Sbjct: 358 PPPPPP 363
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect(2) = 0.33
Identities = 22/90 (24%), Positives = 22/90 (24%)
Frame = +2
Query: 824 GXGGGGGGFXXXKXXXXPXGKGXXXXGAXXXXXXXXXXXPGXXGXGXXXXXXXXGGXXXX 1003
G GGG GG P G G G P G G GG
Sbjct: 37 GCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGG 96
Query: 1004 PXXGGXXXXKXXXXXGXXXGXXXXXGXXGG 1093
GG G G G GG
Sbjct: 97 CGGGGGCGGGGGGCGGGGGGCGGGGGGCGG 126
Score = 23.8 bits (49), Expect(2) = 0.33
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 809 SFXFXGXGGGGGG 847
SF F GGGGGG
Sbjct: 19 SFLFPSAGGGGGG 31
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect(2) = 0.33
Identities = 22/90 (24%), Positives = 22/90 (24%)
Frame = +2
Query: 824 GXGGGGGGFXXXKXXXXPXGKGXXXXGAXXXXXXXXXXXPGXXGXGXXXXXXXXGGXXXX 1003
G GGG GG P G G G P G G GG
Sbjct: 37 GCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGG 96
Query: 1004 PXXGGXXXXKXXXXXGXXXGXXXXXGXXGG 1093
GG G G G GG
Sbjct: 97 CGGGGGCGGGGGGCGGGGGGCGGGGGGCGG 126
Score = 23.8 bits (49), Expect(2) = 0.33
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 809 SFXFXGXGGGGGG 847
SF F GGGGGG
Sbjct: 19 SFLFPSAGGGGGG 31
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 24.6 bits (51), Expect(2) = 2.7
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = -1
Query: 906 APKXXXPFPXGXXXXXXXXNPPPPPPXP 823
+P P P PPPPPP P
Sbjct: 495 SPPPPPPLPPIATPSSVPPPPPPPPPPP 522
Score = 24.2 bits (50), Expect(2) = 2.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 846 PPPPPPXPXKXKE 808
PPPPPP P +E
Sbjct: 516 PPPPPPPPALEQE 528
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 25.0 bits (52), Expect(2) = 3.3
Identities = 15/54 (27%), Positives = 15/54 (27%)
Frame = -1
Query: 990 PPXXXXXXXXPXPXXPGXXXXXXXXXXXAPKXXXPFPXGXXXXXXXXNPPPPPP 829
PP P P P AP P P PPPPPP
Sbjct: 491 PPMPSINGHAPNPPPPPPLLGIAPMSTNAPPPP-PMPGMAPLSTGAPTPPPPPP 543
Score = 23.4 bits (48), Expect(2) = 3.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 846 PPPPPPXP 823
PPPPPP P
Sbjct: 578 PPPPPPPP 585
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 24.2 bits (50), Expect(2) = 4.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 846 PPPPPPXPXKXKE 808
PPPPPP P +E
Sbjct: 505 PPPPPPPPALEQE 517
Score = 23.8 bits (49), Expect(2) = 4.3
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1
Query: 849 NPPPPPPXP 823
+PPPPPP P
Sbjct: 488 SPPPPPPLP 496
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 24.2 bits (50), Expect(2) = 4.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 846 PPPPPPXPXKXKE 808
PPPPPP P + ++
Sbjct: 141 PPPPPPPPPQLQQ 153
Score = 23.8 bits (49), Expect(2) = 4.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1
Query: 849 NPPPPPPXP 823
+PPPPPP P
Sbjct: 139 SPPPPPPPP 147
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 28.7 bits (61), Expect = 9.0
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -1
Query: 846 PPPPPPXPXKXKETXFXX*LFFSPFXXFPXXPXXP 742
PPPPPP P + T + PF F P P
Sbjct: 549 PPPPPPHPEEEYATPYTVPPGKQPFPPFGEGPATP 583
>AF026210-3|AAB71286.3| 382|Caenorhabditis elegans Hypothetical
protein F48A11.4 protein.
Length = 382
Score = 28.7 bits (61), Expect = 9.0
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 351 KFYLIIFTIL*K-HV*WLPNGQVWISSKVLNELSTQDTLTRSGNKSDGNIKINISKNY 521
K+Y I T L + H+ WL + VWI S ++ Q L + I++ NY
Sbjct: 93 KYYSIDLTDLARWHLAWLTDPNVWIDSATIDMEFDQKLLVEKRKFQIKELNISVQANY 150
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 24.2 bits (50), Expect(2) = 9.6
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +2
Query: 824 GXGGGGGGFXXXKXXXXPXGKGXXXXGAXXXXXXXXXXXPGXXGXG 961
G GGGGGGF G G G G G G
Sbjct: 58 GGGGGGGGFGGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGG 103
Score = 22.6 bits (46), Expect(2) = 9.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 818 FXGXGGGGGG 847
F G GGGGGG
Sbjct: 51 FGGGGGGGGG 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,561,230
Number of Sequences: 27780
Number of extensions: 373067
Number of successful extensions: 2160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3443371140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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