Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_N13
(1273 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1433 + 26513728-26514135,26525534-26526280 31 2.6
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 31 2.6
06_03_0905 + 25843547-25844314 30 3.4
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 30 3.4
12_02_1174 - 26696869-26698191 30 4.5
07_03_1160 - 24430240-24431268 30 4.5
03_01_0515 - 3864796-3865425 30 4.5
11_06_0610 - 25449085-25453284 29 5.9
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.9
08_02_1615 + 28257275-28258428,28258523-28259144 29 7.8
07_01_0862 - 7172083-7172931 29 7.8
>07_03_1433 + 26513728-26514135,26525534-26526280
Length = 384
Score = 30.7 bits (66), Expect = 2.6
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = -2
Query: 690 PPXXXXKPXPPPQXPGPXXXLXXKXKXPQKPNPXSPXXXXFFXPKKTXXPXP 535
PP P PP P P P P SP + P T P P
Sbjct: 28 PPTPITYPSPPSLSPSMPPTYPPPSSTPPSPAPVSPSPPTTYPPPSTTPPNP 79
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 30.7 bits (66), Expect = 2.6
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Frame = -2
Query: 717 PPXFXKXXFPPXXXXKPXPPPQXPGPXXXLXXKXKXPQ-KPNPXSPXXXXFFXPKKTXXP 541
PP PP KP P P PGP P+ KP P P F PK P
Sbjct: 180 PPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGPKPKPGPPQPWWPIPF-PKPPCPP 238
>06_03_0905 + 25843547-25844314
Length = 255
Score = 30.3 bits (65), Expect = 3.4
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -3
Query: 611 GPKNQTPFPPXXAXFXXXKKXPXPPPXPXKXXKTH 507
GPKN TP PP + P P P K TH
Sbjct: 55 GPKNPTPRPPKGPTYPSPVTRPPPLVAPPKVPVTH 89
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 30.3 bits (65), Expect = 3.4
Identities = 17/58 (29%), Positives = 19/58 (32%)
Frame = -2
Query: 690 PPXXXXKPXPPPQXPGPXXXLXXKXKXPQKPNPXSPXXXXFFXPKKTXXPXPXTXKXK 517
PP P PPP P P K P P P P PK P T + +
Sbjct: 349 PPPPPPPPPPPPPPPPPKLNTAPKPPPPPPPPPSVPSNNNL--PKPAEPPAVPTSRRR 404
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 4.5
Identities = 13/49 (26%), Positives = 18/49 (36%)
Frame = -2
Query: 669 PXPPPQXPGPXXXLXXKXKXPQKPNPXSPXXXXFFXPKKTXXPXPXTXK 523
P PPP+ P + P P+P P ++ P P P K
Sbjct: 247 PPPPPRAPVKMPRVLEPKPSPPPPSPLPPPPEDYWSPTAVTPPEPTKPK 295
>07_03_1160 - 24430240-24431268
Length = 342
Score = 29.9 bits (64), Expect = 4.5
Identities = 24/88 (27%), Positives = 26/88 (29%)
Frame = -2
Query: 804 PXXKXPPXXPFXGFXPFXAXXLKIFXXXXPPXFXKXXFPPXXXXKPXPPPQXPGPXXXLX 625
P PP P G P + P K PP +P P Q P P
Sbjct: 59 PNPNQPPLQPTPGVPPLPNPDVPPMNKPDVPPMPKPDGPPIPPVQPCPD-QPPQP----- 112
Query: 624 XKXKXPQKPNPXSPXXXXFFXPKKTXXP 541
K P PNP P P K P
Sbjct: 113 -KPDGPPLPNPNQPPQPNPNGPPKPDMP 139
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.9 bits (64), Expect = 4.5
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -2
Query: 690 PPXXXXKPXPPPQXPGPXXXLXXKXKXPQKPNPXSP 583
PP P PPP P P P P P SP
Sbjct: 76 PPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSP 111
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 5.9
Identities = 18/74 (24%), Positives = 22/74 (29%)
Frame = -2
Query: 804 PXXKXPPXXPFXGFXPFXAXXLKIFXXXXPPXFXKXXFPPXXXXKPXPPPQXPGPXXXLX 625
P PP P P PP K PP P PP + P P +
Sbjct: 1100 PEESSPPSVPKASSPPTEKSLPPPATVSLPPPTVKPLPPPVPVSSPPPPEKSPPPPAPVI 1159
Query: 624 XKXKXPQKPNPXSP 583
+ P P +P
Sbjct: 1160 LPPPPIKSPPPPAP 1173
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 717 PPXFXKXXFPPXXXXKPXPPPQXPGPXXXLXXKXKXPQKPNP 592
PP K PP P PPP GP K P P P
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 29.1 bits (62), Expect = 7.8
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -2
Query: 690 PPXXXXKPXPPPQXPGPXXXLXXKXKXPQKPNPXSPXXXXF 568
PP PPP+ P P + P KP P +P F
Sbjct: 59 PPPPAPLTPPPPKSPPPPPHIQTTDLPPPKPLPPAPLRQLF 99
>07_01_0862 - 7172083-7172931
Length = 282
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = -2
Query: 735 IFXXXXPPXFXKXXFPPXXXXKPXP-PPQXPGPXXXLXXKXKXPQKPNPXSPXXXXFFXP 559
+F PP +PP K P PP P P L P+K N +P P
Sbjct: 158 LFPLPLPPRKKPLLYPPPLPPKKKPLPPPSPPPQPPL------PEKEN--TPLPPLLLPP 209
Query: 558 KKTXXPXP 535
KK P P
Sbjct: 210 KKKPLPPP 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,634,869
Number of Sequences: 37544
Number of extensions: 252836
Number of successful extensions: 969
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3945842028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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