Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_N13
         (1273 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    29   5.3  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   9.3  

>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
 Frame = -2

Query: 690  PPXXXXKPXPPPQX-PGPXXXLXXKXKXPQKPNPXSPXXXXFFXPKKTXXPXP 535
            PP     P P P   PGP          P KP+P  P       P     P P
Sbjct: 927  PPIPVPNPIPKPNPGPGPGPPSPNGPSDPNKPSPNGPSPNGPNGPSDPNKPGP 979


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 22/90 (24%), Positives = 26/90 (28%)
 Frame = +2

Query: 536 GXGXXVFXGXKXXXXXGEXGFGFWGXXXXXXKXXXGPGXWGGGXGFXXXXGGXXXXXKXG 715
           G G   + G       G  G G+ G          G G WGG  G     GG       G
Sbjct: 42  GWGRPGWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGG 101

Query: 716 GXXXKKIFXKXAXXGXKPXKGXXGGXXXXG 805
           G        +    G    +G  GG    G
Sbjct: 102 GGRGGGGGGRGGGGGGGGGRGGGGGGRGGG 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,434,112
Number of Sequences: 27780
Number of extensions: 156004
Number of successful extensions: 383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3547715720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)