Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_N12
(1188 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 164 2e-41
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 164 2e-41
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 79 1e-15
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 77 5e-15
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 77 5e-15
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 50 6e-07
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 33 0.078
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 164 bits (399), Expect = 2e-41
Identities = 84/124 (67%), Positives = 91/124 (73%)
Frame = +1
Query: 73 MQIFVKTLSGVXPXHWRWKLPTLSKMSKLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSXY 252
MQIFVKTL+G T+ + K K + ++ QQRLIFAGKQLE GRTLS Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNV-KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 253 NIQKXSTLHLVLXLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTN 432
NIQK STLHLVL LRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 60 NIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTN 119
Query: 433 NLRP 444
LRP
Sbjct: 120 QLRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 164 bits (399), Expect = 2e-41
Identities = 84/124 (67%), Positives = 91/124 (73%)
Frame = +1
Query: 73 MQIFVKTLSGVXPXHWRWKLPTLSKMSKLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSXY 252
MQIFVKTL+G T+ + K K + ++ QQRLIFAGKQLE GRTLS Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNV-KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 253 NIQKXSTLHLVLXLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTN 432
NIQK STLHLVL LRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 60 NIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTN 119
Query: 433 NLRP 444
LRP
Sbjct: 120 QLRP 123
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 79.0 bits (186), Expect = 1e-15
Identities = 47/84 (55%), Positives = 53/84 (63%)
Frame = +1
Query: 52 VFHRRNTMQIFVKTLSGVXPXHWRWKLPTLSKMSKLKSKPRKVFLQSQQRLIFAGKQLEX 231
V R MQIFVKTL+G T+ + K K + ++ QQRLIFAGKQLE
Sbjct: 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV-KSKIQDKEGIPPDQQRLIFAGKQLED 128
Query: 232 GRTLSXYNIQKXSTLHLVLXLRGG 303
GRTLS YNIQK STLHLVL LRGG
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGG 152
Score = 79.0 bits (186), Expect = 1e-15
Identities = 47/84 (55%), Positives = 53/84 (63%)
Frame = +1
Query: 52 VFHRRNTMQIFVKTLSGVXPXHWRWKLPTLSKMSKLKSKPRKVFLQSQQRLIFAGKQLEX 231
V R MQIFVKTL+G T+ + K K + ++ QQRLIFAGKQLE
Sbjct: 146 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV-KSKIQDKEGIPPDQQRLIFAGKQLED 204
Query: 232 GRTLSXYNIQKXSTLHLVLXLRGG 303
GRTLS YNIQK STLHLVL LRGG
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGG 228
Score = 79.0 bits (186), Expect = 1e-15
Identities = 47/84 (55%), Positives = 53/84 (63%)
Frame = +1
Query: 52 VFHRRNTMQIFVKTLSGVXPXHWRWKLPTLSKMSKLKSKPRKVFLQSQQRLIFAGKQLEX 231
V R MQIFVKTL+G T+ + K K + ++ QQRLIFAGKQLE
Sbjct: 222 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV-KSKIQDKEGIPPDQQRLIFAGKQLED 280
Query: 232 GRTLSXYNIQKXSTLHLVLXLRGG 303
GRTLS YNIQK STLHLVL LRGG
Sbjct: 281 GRTLSDYNIQKESTLHLVLRLRGG 304
Score = 79.0 bits (186), Expect = 1e-15
Identities = 47/84 (55%), Positives = 53/84 (63%)
Frame = +1
Query: 52 VFHRRNTMQIFVKTLSGVXPXHWRWKLPTLSKMSKLKSKPRKVFLQSQQRLIFAGKQLEX 231
V R MQIFVKTL+G T+ + K K + ++ QQRLIFAGKQLE
Sbjct: 298 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV-KSKIQDKEGIPPDQQRLIFAGKQLED 356
Query: 232 GRTLSXYNIQKXSTLHLVLXLRGG 303
GRTLS YNIQK STLHLVL LRGG
Sbjct: 357 GRTLSDYNIQKESTLHLVLRLRGG 380
Score = 77.0 bits (181), Expect = 5e-15
Identities = 45/77 (58%), Positives = 51/77 (66%)
Frame = +1
Query: 73 MQIFVKTLSGVXPXHWRWKLPTLSKMSKLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSXY 252
MQIFVKTL+G T+ + K K + ++ QQRLIFAGKQLE GRTLS Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNV-KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 253 NIQKXSTLHLVLXLRGG 303
NIQK STLHLVL LRGG
Sbjct: 60 NIQKESTLHLVLRLRGG 76
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 77.0 bits (181), Expect = 5e-15
Identities = 45/77 (58%), Positives = 51/77 (66%)
Frame = +1
Query: 73 MQIFVKTLSGVXPXHWRWKLPTLSKMSKLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSXY 252
MQIFVKTL+G T+ + K K + ++ QQRLIFAGKQLE GRTLS Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNV-KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 253 NIQKXSTLHLVLXLRGG 303
NIQK STLHLVL LRGG
Sbjct: 60 NIQKESTLHLVLRLRGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 77.0 bits (181), Expect = 5e-15
Identities = 45/77 (58%), Positives = 51/77 (66%)
Frame = +1
Query: 73 MQIFVKTLSGVXPXHWRWKLPTLSKMSKLKSKPRKVFLQSQQRLIFAGKQLEXGRTLSXY 252
MQIFVKTL+G T+ + K K + ++ QQRLIFAGKQLE GRTLS Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNV-KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 253 NIQKXSTLHLVLXLRGG 303
NIQK STLHLVL LRGG
Sbjct: 60 NIQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 50.0 bits (114), Expect = 6e-07
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +1
Query: 73 MQIFVKTLSGVXPXHWRWKLPTLSKMSKLKSK--PRKVFLQSQQRLIFAGKQLEXGRTLS 246
M I VKTL+G + K+S++K + ++ SQQRLI+AGKQ+ +
Sbjct: 1 MLIKVKTLTG---KEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAE 57
Query: 247 XYNIQKXSTLHLVLXLRGGT 306
Y+++ S LHLVL LRGG+
Sbjct: 58 SYHLEGGSVLHLVLALRGGS 77
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 33.1 bits (72), Expect = 0.078
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 187 QSQQRLIFAGKQLEXGRTLSXYNIQKXSTLHLVLXL 294
+ +QRLI+AG+ L+ +L Y IQ ++HLV L
Sbjct: 41 KERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,189
Number of Sequences: 5004
Number of extensions: 41087
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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