Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_N08
(1223 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0218 + 18219956-18220555 33 0.46
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 30 4.3
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 29 5.6
12_01_0816 + 7502669-7503145 29 7.4
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 29 7.4
08_01_0156 - 1233431-1233925 29 9.8
06_02_0194 + 12885340-12885708,12886098-12886367,12886476-128865... 29 9.8
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 29 9.8
>06_03_0218 + 18219956-18220555
Length = 199
Score = 33.1 bits (72), Expect = 0.46
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = -2
Query: 421 NGGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 242
NGG ++ A +T P R R R E G + KR+GR R G RGKR
Sbjct: 81 NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136
Query: 241 LVS 233
S
Sbjct: 137 RAS 139
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 29.9 bits (64), Expect = 4.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 256 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 137
SRGK L+S + R PP + + V+ + GGG G P T
Sbjct: 25 SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 29.5 bits (63), Expect = 5.6
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Frame = +2
Query: 251 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*VVRSKLGCVHEPPVQ 424
P S+ + +PVPTLP++ + F G S H + R Y S G V P
Sbjct: 282 PQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAI 341
Query: 425 PDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYV 538
P + +Y ++ + P A + R+V
Sbjct: 342 PSYPPAAPSYPPATSAASSSVQPFHAEAAAHLRHPRHV 379
>12_01_0816 + 7502669-7503145
Length = 158
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 440 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 309
R SG +R V PAW ER + ++ +V E+A ERR
Sbjct: 8 RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 29.1 bits (62), Expect = 7.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 619 QQSADTKYCSSSVAVVRPPLQELCSTAYIPRSA 521
Q S K SSVA PP + L ST +PR++
Sbjct: 176 QNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208
Score = 28.7 bits (61), Expect = 9.8
Identities = 24/71 (33%), Positives = 30/71 (42%)
Frame = -2
Query: 718 RNLLLANKKTTATSGGLFAGSRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQELCSTA 539
RN + AN A+S A N S S SSSVA PP + L ST
Sbjct: 206 RNSITAN---LASSSVAAASPPPRNLVSTTPVPHNSIAANLASSSVAAASPPPRNLVSTT 262
Query: 538 YIPRSANPVTS 506
+PR NP+ +
Sbjct: 263 PVPR--NPIAA 271
>08_01_0156 - 1233431-1233925
Length = 164
Score = 28.7 bits (61), Expect = 9.8
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -2
Query: 394 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 221
LG D TE+ A A A+R E+ GG G R G RA + +G +
Sbjct: 89 LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148
Query: 220 RVSPPLT 200
R SP ++
Sbjct: 149 RASPTVS 155
>06_02_0194 +
12885340-12885708,12886098-12886367,12886476-12886592,
12888044-12888094,12889599-12889719,12890146-12890311,
12890598-12890691
Length = 395
Score = 28.7 bits (61), Expect = 9.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = -3
Query: 708 CLQTKKPPLPAVVC-----LPDQELPTLFPKVTGFSRAQIPNTVLL 586
CL ++PP PA +C LPD + T+ + F R VLL
Sbjct: 46 CLALRRPPPPAELCVLLNDLPDNDFATVVKSLVEFRRNNGDEPVLL 91
>03_02_0955 -
12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 28.7 bits (61), Expect = 9.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 121 SWPFAGLLLTCSFLRDHPDSVDNRITAF 38
SWP LL S LRD P + +R+ AF
Sbjct: 95 SWPSPTLLAVASLLRDLPAAYRHRVPAF 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,302,478
Number of Sequences: 37544
Number of extensions: 751375
Number of successful extensions: 2201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2200
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3759607596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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