Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_N07
         (1275 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    25   3.6  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    25   4.7  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   6.2  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 401 DKCGNKVNEIYPYIIQEIKPTLTELGIDTPEELGYDK 511
           +K   K+NE+Y  I +EI+P L +L  +    + + K
Sbjct: 186 EKKDAKLNELYAVIREEIEPKLEKLRKEREHYIEFQK 222


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 547 LHVVNTF*SEFWLIVAKLLRCVNT 476
           L V N F S  WL +A  L+ +NT
Sbjct: 548 LDVTNAFNSASWLAIANALQRINT 571


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 275 KGMNDLCGMDLVPDPKIIKAALHACR 352
           +G+  LC +  V +  I K  LHACR
Sbjct: 618 RGITSLCAIAKVFELVIYKNLLHACR 643


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 889,877
Number of Sequences: 2352
Number of extensions: 17017
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 146331426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)