Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_N06
         (1289 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      82   1e-17
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          70   4e-14
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      41   3e-05

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 81.8 bits (193), Expect = 1e-17
 Identities = 40/95 (42%), Positives = 53/95 (55%)
 Frame = +3

Query: 264 MDDDQQFCLRXNNHXSTLVSVFDTLLEKGMHVDCTLAAEGQTLXXHKVLLSACSPYFESV 443
           M D Q FCLR NN+ S++ S F+ L +    VD TLA +G++L  H+V+LSACSPYF  +
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFREL 60

Query: 444 LSXXYDKHPXIIXXXVXXXXXXXXXXXXXRGEVNI 548
           L     KHP I+   V              GEVN+
Sbjct: 61  LKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNV 95


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 70.1 bits (164), Expect = 4e-14
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = +3

Query: 276 QQFCLRXNNHXSTLVSVFDTLLEKGMHVDCTLAAEGQTLXXHKVLLSACSPYFESVLSXX 455
           Q +CLR NN+ S + SVF  LL+    VD TLA    +L  HKV+LSACS YF+ +L   
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 456 YDKHPXII-XXXVXXXXXXXXXXXXXRGEVNIPXDQL 563
             KHP II    V             RGE+++   +L
Sbjct: 69  PCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAEL 105


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 40.7 bits (91), Expect = 3e-05
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = +3

Query: 264 MDDDQQFCLRXNNHXSTLVSVFDTLLEKGMHVDCTLAAE 380
           M D Q FCLR NN+ S++ S F+ L +    VD TLA E
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,089
Number of Sequences: 438
Number of extensions: 2258
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44303247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)