Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_N04
         (1232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.062
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.76 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.8  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   5.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.3  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   7.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   7.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.062
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
 Frame = -1

Query: 656 PLXGGXPXPPXX---GGXXPPPPPNPXXGXFXGGGG--GGXPKXXPPP 528
           P+ GG P PP      G  PPPPP P      GG       P+  P P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 30.7 bits (66), Expect = 0.43
 Identities = 17/48 (35%), Positives = 17/48 (35%)
 Frame = -1

Query: 656 PLXGGXPXPPXXGGXXPPPPPNPXXGXFXGGGGGGXPKXXPPPPXGGG 513
           P     P PP       PPPP P  G    G G   P   PP    GG
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGV--AGAGPPPPPPPPPAVSAGG 789



 Score = 30.3 bits (65), Expect = 0.57
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +1

Query: 514 PPPXGGGGXXLGXPPPPPPXKXPXXGLGG 600
           PPP   G    G PPPPPP   P    GG
Sbjct: 763 PPPPPPGVAGAGPPPPPPP--PPAVSAGG 789



 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = -3

Query: 639 PXPPPXGGXXPPPPPQPXXRXFXXXXXXXGPQXXPPXPP 523
           P P P  G  PPPPP P            GP   PP PP
Sbjct: 752 PPPAPIMGGPPPPPPPP-------GVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 514 PPPXGGGGXXLGXPPPPPPXKXPXXGLGGGGGXXPP 621
           PPP       +G PPPPP    P  G+ G G   PP
Sbjct: 752 PPP----APIMGGPPPPP----PPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 1193 PPPXXXXGAXPPPPP 1149
            PPP    GA PPPPP
Sbjct: 765  PPPPGVAGAGPPPPP 779



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 1191 PPXXXFXGPPPPPPXGXXLXXXXXGPP 1111
            PP     GPPPPPP           PP
Sbjct: 753  PPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 1193 PPPXXXXGAXPPPPP 1149
            PPP    G  PPPPP
Sbjct: 752  PPPAPIMGGPPPPPP 766



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 796 PPPGXXKXXGGPPXXPPGPP 855
           PPP       GPP  PP PP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
 Frame = -3

Query: 639 PXPPPX---GGXXPPPPP 595
           P PPP    GG  PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 687 GXPXXPPPXKGXGGGXXXXXPPP 755
           G P  PPP  G  G      PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 9.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 1191 PPXXXFXGPPPPPP 1150
            PP     GPPPPPP
Sbjct: 767  PPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 517 PPXGGGGXXLGXPPPPPPXKXPXXG 591
           PP G G      PPPPPP +    G
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAG 349



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 659 PPLXGGXPXPPXXGGXXPPPPPNP 588
           PPL  G P  P      P PPP P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAP 480



 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -1

Query: 608 PPPPPNPXXGXFXGGGGGGXPKXXPPPP 525
           PPPP     G    G G       PPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPP 341


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -3

Query: 657 PPFXGXPXPPPXGGXXP--PPPPQP 589
           PP    P PPP G   P  PPPP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +1

Query: 790 GGPPPGXXKXXGGPPXXPPGPPXXXTTXGXKKKNP 894
           G PPP        PP  PP PP        K K P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 514 PPPXGGGGXXLGXPPPPPP 570
           PPP   G      PPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = -1

Query: 659  PPLXGGXPXPPXXGGXXPPPPPNPXXGXFXGGGGGGXPKXXPPPP 525
            PP+      PP      PPPPP               P   PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 657  PPFXGXPXPPPXGGXXPPPPPQP 589
            PP    P PPP     PPPP  P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAP 1721


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
 Frame = -3

Query: 654 PFXGX---PXPPPXGGXXPPPPPQP 589
           PF G    P P   G   PPPPP P
Sbjct: 339 PFAGNQVMPTPQVQGSRPPPPPPMP 363


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 590 GWGGGGGXXPPXGGGXG 640
           G+GGG G  PP  GG G
Sbjct: 192 GFGGGSGGPPPGPGGFG 208


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 608 PPPPPNPXXGXFXGGGGGGXPKXXPPPPXGG 516
           PPPP  P  G   GGG  G P   P    GG
Sbjct: 99  PPPPRGPLFGPRIGGGHHG-PLHGPHGGFGG 128


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect(2) = 7.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 556 PPPPPXKXPXXGLGGG 603
           PPPPP   P     GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 21.0 bits (42), Expect(2) = 7.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 553 PPPPPP 570
           PPPPPP
Sbjct: 907 PPPPPP 912


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 657  PPFXGXPXPPPXGGXXPPPPP 595
            PP    P P P  G  P PPP
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPP 1213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.157    0.540 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,778
Number of Sequences: 5004
Number of extensions: 50177
Number of successful extensions: 279
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)