Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_N04
         (1232 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 599 PPNPXXGXFXGGGGGGXPKXXP 534
           PPNP  G   GG  G  P   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/20 (50%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
 Frame = +1

Query: 790 GGPP-PGXXKXXGGPPXXPP 846
           G PP P      GGPP  PP
Sbjct: 37  GSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +3

Query: 1068 GAPPXGXKKKXXXPXGXPPXXXXXXPPGGGGGXGP 1172
            G  P   +       G PP      PPGG  G  P
Sbjct: 22   GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 505 KKXPPPXGGGGXXLGXPPPPPPXKXP 582
           ++  PP    G   G PP  PP + P
Sbjct: 35  QRGSPPNPSQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.157    0.540 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 306,456
Number of Sequences: 438
Number of extensions: 12935
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42022050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)