Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_N02
         (1166 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   3.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   3.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   6.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   9.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 350 AKRHRRMPQGWSNNTVGQKLGLVELFPRLLPYQISQDSRFGTIQEL 487
           A+  + MP GW      Q L L +L     P+QI    + G I++L
Sbjct: 76  ARVQQSMPDGWETEISDQMLELRDLPISGKPFQIRM--KHGLIRDL 119


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 378 GGRTIQWVRNWGWWNY 425
           GGR +Q   +W W NY
Sbjct: 104 GGRLLQPYPDWSWANY 119


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 299 IAVL*LLVAWNTVRCLDAKRHRRMPQGWSNNTVGQKLGLVE 421
           + +L +L  +  + C+ A RHR +    S N   ++  L+E
Sbjct: 209 LPMLVMLYVYGRISCVIASRHRNLEATESENVRPRRNVLIE 249


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 357 DIDVCHKGGRTIQWVRNWG-WWNY 425
           +I    +G   ++W+ NWG  W +
Sbjct: 272 EISNAFRGNNNLKWLVNWGEQWGF 295


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 437 VIAEIVPPAPISDPLYCSTTLVAYVYV 357
           ++AEI+PP  ++ PL     L   V V
Sbjct: 284 LLAEIIPPTSLTVPLLGKYLLFTMVLV 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 305,962
Number of Sequences: 438
Number of extensions: 7147
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39644829
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)