Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_N01
         (1230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    38   0.002

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 23/47 (48%), Positives = 24/47 (51%)
 Frame = -1

Query: 822 GWGXGKGPXFRXGXGGXVFX*GPGXXXGGXXGVFXGGGGGFXXSPXG 682
           G+G G G  F  G GG  F  GPG   GG  G F GG GGF   P G
Sbjct: 225 GFGGGPG-GFEGGPGG--FGGGPGGFGGGLGG-FGGGPGGFGGGPGG 267



 Score = 33.1 bits (72), Expect = 0.081
 Identities = 20/47 (42%), Positives = 20/47 (42%)
 Frame = -1

Query: 822 GWGXGKGPXFRXGXGGXVFX*GPGXXXGGXXGVFXGGGGGFXXSPXG 682
           G G G  P    G GG     G G   GG  G F GG GGF   P G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG-FGGGPGGFEGGPGG 239



 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -1

Query: 786 GXGGXVFX*GPGXXXGGXXGVFXGGGGGFXXSPXG 682
           G GG     G     GG  G F GG GGF   P G
Sbjct: 212 GFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 664 GGXFXXXFXGGGAXGXTPXXGXFXGXRPFGG 572
           GG F     GGG+ G  P  G F G   FGG
Sbjct: 187 GGGFGGF--GGGSGGPPPGPGGFGGFGGFGG 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.150    0.514 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,202
Number of Sequences: 5004
Number of extensions: 25158
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)