Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M19
         (1176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...   208   9e-55
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...   101   1e-22
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.8  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    27   6.7  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   8.8  

>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score =  208 bits (509), Expect = 9e-55
 Identities = 112/231 (48%), Positives = 152/231 (65%), Gaps = 8/231 (3%)
 Frame = +3

Query: 312 YEXAVRKLNRLQSNKSTIEQIRKDIRTGQKCTNLEDMENYLSRTGVTMSKLDELSVVHVA 491
           +E A+ +LN LQSN   +E +RK  +     + +E M ++L   G   S L+ L+V+HVA
Sbjct: 27  FEGAINRLNSLQSNAKVLEVLRKRGKIPNDQSMVE-MRHWLRCIGYQPSDLNRLNVIHVA 85

Query: 492 GTKGKGSTSAMCESILRH---HGFRT-----GFYSSPHLVAVRERVRLNGRVISEDMFAK 647
           GTKGKGST A   SIL+     G R+     G Y+SPHL +V ER++LNG+ IS+++F K
Sbjct: 86  GTKGKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLNGKPISQELFTK 145

Query: 648 YFHDVHQRLEDTQKFEGDMPKYFAFLTVMAYNIFLKEKVDVAIVEVGIGGLVDYTNILRK 827
           YF DV +RLE+    + + P YF FLT+MA+++F+ E VD AI+EVGIGG  D TN++ K
Sbjct: 146 YFFDVWERLENAVGSDSEKPMYFRFLTLMAWHVFISENVDAAIIEVGIGGEYDSTNLIEK 205

Query: 828 VPVVGITALGLDHTSILGNTIQEIAASKAGIMKRGCEAYTVQQPNEAMDVL 980
                +T+LGLDHTS+LGNTI EIA  KAGI K    A T +Q  EAM+VL
Sbjct: 206 PYATAVTSLGLDHTSLLGNTIAEIAWQKAGIYKESAIALTCEQAPEAMNVL 256


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score =  101 bits (243), Expect = 1e-22
 Identities = 54/155 (34%), Positives = 87/155 (56%)
 Frame = +3

Query: 465 DELSVVHVAGTKGKGSTSAMCESILRHHGFRTGFYSSPHLVAVRERVRLNGRVISEDMFA 644
           +    V +AGT GKGS  +   + L     +TG Y+SPH +  R+ + +NG++ SE++F 
Sbjct: 22  ESFCAVQIAGTNGKGSICSYIYTSLLQAAIKTGRYTSPHFLEPRDTISINGQIASEEIFN 81

Query: 645 KYFHDVHQRLEDTQKFEGDMPKYFAFLTVMAYNIFLKEKVDVAIVEVGIGGLVDYTNILR 824
             +  V   +E  ++F     + F  LT  A+  F    V VA++E G+GG +D TN+  
Sbjct: 82  TCWKQV---IEVDRRFRTKATE-FELLTATAFQCFHHSGVRVAVIETGMGGRLDATNVFE 137

Query: 825 KVPVVGITALGLDHTSILGNTIQEIAASKAGIMKR 929
           +  +  I+ + LDH + LGNT++ IA  KAGI K+
Sbjct: 138 EPVLSIISRICLDHQAFLGNTLEAIAKEKAGIFKK 172


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 609  LNGRVISEDMFAKYFHDVHQRLEDTQKFEGDMPKYFAFLTVMAY 740
            LN  V  E ++  YF+   +R  D   F       +A++ +M Y
Sbjct: 3445 LNSSVFPESIYYDYFYKTFERYCDFWFFRRTFTTQYAYMIIMTY 3488


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 847 VMPTTGTFLKILV*STKPPIPTSTMATST 761
           V+PT GTF   L   +  P+ T+T+ T++
Sbjct: 133 VIPTAGTFTTTLTSGSSYPVATTTVRTAS 161


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 18/81 (22%), Positives = 35/81 (43%)
 Frame = +3

Query: 612 NGRVISEDMFAKYFHDVHQRLEDTQKFEGDMPKYFAFLTVMAYNIFLKEKVDVAIVEVGI 791
           +G +   D+F   +  + + LEDT+    +  K +  LT++     +    D++  +V I
Sbjct: 298 DGSLTGADIFRSDWPGLVKELEDTKAITPEQAKLYRHLTIVGLVGSIDN--DMSSTDVTI 355

Query: 792 GGLVDYTNILRKVPVVGITAL 854
           G       I   V  +  TA+
Sbjct: 356 GAFSSLHRICEAVDSISSTAI 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,976,166
Number of Sequences: 5004
Number of extensions: 79240
Number of successful extensions: 239
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 631521694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)