Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M18
         (1225 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    33   0.061
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   9.3  

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 33.5 bits (73), Expect = 0.061
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -1

Query: 733 NLDKTKATKIVDNTKNVTKT*NVSSENTSVNAGI*RYISSMTSRFPLGFAISAF 572
           NLD+ K     DN  + +   ++SS NTS+ +    ++S    RF L F I AF
Sbjct: 323 NLDEFKPADGADNEDSKSLVSHISSSNTSLFSNFTFFLSREVPRFSLEFVIRAF 376


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 665  HILCFCYVFCVVYNFSCLCFVQVHYHKTC 751
            H + +  +  +V N  CL F   HY   C
Sbjct: 1115 HAIAYAVLHHLVSNIGCLGFFSTHYQSLC 1143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,275
Number of Sequences: 5004
Number of extensions: 43345
Number of successful extensions: 171
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)