Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M18
         (1225 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012163-1|AAH12163.1|  112|Homo sapiens mitochondrial ribosomal...    36   0.23 
AK123603-1|BAC85658.1|  143|Homo sapiens protein ( Homo sapiens ...    33   2.1  

>BC012163-1|AAH12163.1|  112|Homo sapiens mitochondrial ribosomal
           protein L53 protein.
          Length = 112

 Score = 36.3 bits (80), Expect = 0.23
 Identities = 24/84 (28%), Positives = 34/84 (40%)
 Frame = +1

Query: 244 LKFAPFGAXATHTRXFAHXISAPXIAITNPNCSVXPEVLCXRXXPTVXXXXXXXXXXXXK 423
           ++F PF      TR F   +S+  +  TN NCSV  +V      P V             
Sbjct: 18  VQFCPFEKNVESTRTFLQTVSSEKVRSTNLNCSVIADVRHDGSEPCVDVLFGDG------ 71

Query: 424 IQKVXLSSEHLTCLEILQLLNKHI 495
             ++ +   HLT LE+L     HI
Sbjct: 72  -HRLIMRGAHLTALEMLTAFASHI 94


>AK123603-1|BAC85658.1|  143|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41609 fis, clone CTONG3001560. ).
          Length = 143

 Score = 33.1 bits (72), Expect = 2.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 641 IY*CILRRHILCFCYVFCVVYNFSCLCFVQVH 736
           ++ C +R  +LC C   C+V   +C CFV VH
Sbjct: 70  VFSCCVRVLVLCVCTHVCLVTVCACACFVCVH 101


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,784,416
Number of Sequences: 237096
Number of extensions: 1843514
Number of successful extensions: 13110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11022
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17339562450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)