Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M18
         (1225 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    30   0.047
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   7.2  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   9.5  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.9 bits (64), Expect = 0.047
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
 Frame = +3

Query: 555 EDKNKIKAEMAKPKGNLDVIEEIYRQIPAFTDVFSEDTFYVFVTFFVLSTILVAFVLSRF 734
           E+K K K +   P  N+ V  ++   + A  D+F  DT Y + T   L+  +V + +  F
Sbjct: 465 EEKRKNKNKNLTPAVNIIVKGDVAGSVEALLDIF--DT-YTYDTICQLN--IVHYGIG-F 518

Query: 735 ITIKPVE*IVTFKLKYNDLLKNFTLLILSLYNEKGI-LKLYH 857
           IT   +E   TFK        N T  I    N+KG+ L+ Y+
Sbjct: 519 ITQSDIELANTFKAIIYGFNVNATKQIKDEANKKGVSLRFYN 560


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 740 GNEPGQNKGN*NCRQHKKRNKN 675
           GN+   NK N N +   KRN N
Sbjct: 497 GNKQNDNKQNGNRQNDNKRNGN 518


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 835 FSLYRDRINRVKFFNKSLYFNL 770
           +S Y +  N    +NK LY+N+
Sbjct: 91  YSNYNNYNNNYNNYNKKLYYNI 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,994
Number of Sequences: 438
Number of extensions: 4054
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41661861
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)