Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M16
         (858 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2EM16 Cluster: Putative uncharacterized protein; n=1; ...    35   3.0  
UniRef50_P36044 Cluster: Protein MNN4; n=5; cellular organisms|R...    33   9.2  

>UniRef50_A2EM16 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 887

 Score = 34.7 bits (76), Expect = 3.0
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
 Frame = +1

Query: 277 RKQEEAFSHNYKKKMYPH--SLSFDQSPGPSKRRILSEHTKLYTQLTN*LQTYFTSDRKI 450
           RKQ +A++H+ +K   PH  S S  +   PSK+RI  E      Q+    +       K+
Sbjct: 432 RKQLDAYAHSPRKSSSPHRRSPSPRKRSSPSKQRIPVEEEAEEEQIE---EISPQKSEKV 488

Query: 451 XVPETXTXL*XXDK-----LPKIPXINSHSENFXE-TPKXXXRXSPXXKXPXSXXXXXXF 612
            +P     +   ++     +P +  + SH E+F +  PK   + SP  K   S       
Sbjct: 489 ALPPDELKIEEEEEFSEALIPPVSPVQSHQESFDQPQPKASPKKSPSPKKHISDDDDDLI 548

Query: 613 GKGFPPL 633
               PP+
Sbjct: 549 PAFVPPV 555


>UniRef50_P36044 Cluster: Protein MNN4; n=5; cellular organisms|Rep:
           Protein MNN4 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 1178

 Score = 33.1 bits (72), Expect = 9.2
 Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
 Frame = +1

Query: 223 SGLITE--NFRINSGNNATKRKQEEAFSHNYKKKMYPHSLSFDQSPGPSKRRILSEHTKL 396
           SGL+ E  N  INS N   K KQ+  F+HN   +++   ++ DQ     K  I  E T  
Sbjct: 325 SGLLQEYINDNINSTNKRKKNKQDVEFNHN---RLFQEFVNNDQVNSLYKLEI--EETDK 379

Query: 397 YTQLTN*LQTYFTSDRKIXVPETXTXL*XXDKLPKIPXINSHSENFXETPKXXXRXSP 570
           +T     L     SD K    +    L    KL      ++H+EN+  + K   + SP
Sbjct: 380 FT-FDKDLVYLSPSDFKFDASKKIEELEEQKKLYP-DKFSAHNENYLNSLKNSVKTSP 435


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,576,055
Number of Sequences: 1657284
Number of extensions: 9108622
Number of successful extensions: 13852
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13835
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)