Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M16
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa...    29   1.1  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    27   4.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   6.0  

>SPAC24H6.02c |||TIM23 translocase complex subunit
           Tim15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1

Query: 298 SHNYKKKMYPHSLSFDQSPGPSKRRILSEHTKLYTQ 405
           +HN+ K+ Y +     Q P    R ++++H K++++
Sbjct: 90  NHNFSKQAYHNGTVLVQCPKCKNRHLMADHLKIFSE 125


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 281 LRFVALLPEFILKFSV 234
           L++ ALLPE++ KFS+
Sbjct: 236 LKYAALLPEYVAKFSI 251


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 241 NFRINSGNNATKRKQEEAFSHNYKKKMYPHSLSFDQSP 354
           N + +S    + R+++ AF H + K +   S+SFD  P
Sbjct: 850 NNKASSFRFPSMRREQRAFVHMFAKLLGLESVSFDPEP 887


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,833
Number of Sequences: 5004
Number of extensions: 33972
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)