Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M16
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    25   1.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    25   1.2  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    24   2.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   2.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   4.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   4.8  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 241 NFRINSGNNATKRKQEEAFSHNYKKKMYPHSLSFDQSPGP 360
           N  I++ N           ++NY KK+Y + ++ +Q P P
Sbjct: 86  NNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIEQIPVP 125


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 241 NFRINSGNNATKRKQEEAFSHNYKKKMYPHSLSFDQSPGP 360
           N  I++ N           ++NY KK+Y + ++ +Q P P
Sbjct: 86  NNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIEQIPVP 125


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 298 SHNYKKKMYPHSLSFDQSPGP 360
           ++NY KK+Y + ++ +Q P P
Sbjct: 325 NNNYNKKLYYNIINIEQIPVP 345


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 241 NFRINSGNNATKRKQEEAFSHNYKKKMYPHSLSFDQSPGP 360
           N++ N  NN           +N  KK+Y + ++ +Q P P
Sbjct: 328 NYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQIPVP 367


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 304 NYKKKMYPHSLSFDQSPGP 360
           NY KK+Y + ++ +Q P P
Sbjct: 331 NYNKKLYYNIINIEQIPVP 349


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 292 LLPVYVLLRCYRNLS*SFLL 233
           L+PV+  LR YRN + ++L+
Sbjct: 159 LIPVHFALRIYRNGTVNYLM 178


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 292 LLPVYVLLRCYRNLS*SFLL 233
           L+PV+  LR YRN + ++L+
Sbjct: 159 LIPVHFALRIYRNGTVNYLM 178


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 292 LLPVYVLLRCYRNLS*SFLL 233
           L+PV+  LR YRN + ++L+
Sbjct: 210 LIPVHFALRIYRNGTVNYLM 229


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 292 LLPVYVLLRCYRNLS*SFLL 233
           L+PV+  LR YRN + ++L+
Sbjct: 159 LIPVHFALRIYRNGTVNYLM 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,147
Number of Sequences: 438
Number of extensions: 3368
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)