Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_M15
(1242 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.015
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.58
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 9.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.015
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 450 PXXXAPXPPPXPXXXGGVXXPXPPPPXP 367
P P PPP P G P PPPP P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 33.1 bits (72), Expect = 0.082
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -1
Query: 435 PXPPPXPXXXGGVXXPXPPPPXPPXXXXXXPPP 337
P PPP P G P PPPP P PPP
Sbjct: 750 PVPPPAPIMGG----PPPPPPPPGVAGAGPPPP 778
Score = 31.5 bits (68), Expect = 0.25
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -1
Query: 438 APXPPPXPXXXGGVXXPXPPPPXPPXXXXXXPPP 337
AP P P P G P PPPP PPP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -1
Query: 435 PXPPPXPXXXGGVXXPXPPPPXPPXXXXXXPPP 337
P PPP P P PP P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -2
Query: 428 PRPXPXXXGGXXXXXPPPPXPPXRXXXXXXXFFSP 324
P P P G PPPP PP +++P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.58
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -1
Query: 450 PXXXAPXPPPXPXXXGGVXXPXPPPPXPPXXXXXXPPP 337
P AP PPP P V P PP P PPP
Sbjct: 1700 PQMSAPTPPPPPM---SVPPPPSAPPMPAGPPSAPPPP 1734
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = -1
Query: 450 PXXXAPXPPPXPXXXGGVXXPXPPPPXPPXXXXXXPPP 337
P P PP P G PPPP P P P
Sbjct: 1710 PPMSVPPPPSAPPMPAG-PPSAPPPPLPASSAPSVPNP 1746
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 429 PPPXPXXXGGVXXPXPPPPXPP 364
PPP P G PPPP PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 450 PXXXAPXPPPXPXXXGGVXXPXPPPPXPP 364
P P PPP P G P PPP PP
Sbjct: 5 PPGNPPPPPPPP----GFEPPSQPPPPPP 29
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.3
Identities = 28/126 (22%), Positives = 31/126 (24%), Gaps = 2/126 (1%)
Frame = +2
Query: 422 GGGXGAXSXGPXPXPPTKXIWAPGQRXPGXXKXLPXXXKKGXPXKXGKPXXKSXXXXXXK 601
G G S P P PP P P + P +P S
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN 387
Query: 602 XXXPXKXPXXXPXPQDP--PPKXNXQXVXPXTXGGKTKXPFXXPGXXPPENXPAXPXGVX 775
P P P P PP N P P PP P+ P G
Sbjct: 388 PPAP---PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444
Query: 776 XIPXXP 793
P P
Sbjct: 445 AAPPLP 450
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = -1
Query: 450 PXXXAPXPPPXPXXXGG-VXXPXPPPPXP 367
P AP PPP P G V P PP P
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 338 GGGXXXXXXGGXGGGGXGXXTPPXXXGXGGGXGAXSXG 451
G G GG GGG G P G GGG G G
Sbjct: 215 GEGHHHGGHGGFGGGPGGFEGGP--GGFGGGPGGFGGG 250
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Frame = +2
Query: 341 GGXXXXXXGGXGG-GGXGXXTPPXXXGXGGGXGAXSXGP 454
GG GG GG GG G GGG G GP
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.142 0.465
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,198
Number of Sequences: 5004
Number of extensions: 26705
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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