Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M14
         (1220 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.77 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    25   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 919 VDPVKA-TLSTSGWSTIAAPVSP 854
           ++P +A +LSTSG S I  PVSP
Sbjct: 302 IEPAEAESLSTSGSSGILTPVSP 324


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 587 GRQDPRECPARRRKILCLHS 646
           G  +P+ECP  RR   C +S
Sbjct: 1   GINEPQECPYCRRNFSCYYS 20


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 979 SNVMRFIXDAAPRWISLPTSV 917
           S+  R +    PRWI  PT V
Sbjct: 695 SHTQRLVVHVPPRWIVEPTDV 715


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -1

Query: 833 DPGRETCFLD*LSDVQRCERRLLGRLHDHSTTRRQSWPELPSRHQ 699
           DPG  T  +  L    +   R     H  S+   QSW  L S H+
Sbjct: 52  DPGAITGLVASLDGALKLRIRCSDVHHFESSFNAQSWQRLTSLHE 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,866
Number of Sequences: 438
Number of extensions: 6725
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41541798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)