Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M13
         (1158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    62   2e-10
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    49   1e-06
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    34   0.043
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    28   2.1  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    27   6.5  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   6.5  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   8.7  

>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 61.7 bits (143), Expect = 2e-10
 Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
 Frame = +2

Query: 689  YEHVGSAMKFLQLMQYLEVLHPMFGYTKGGVLVPFLQVTGRAFVLF-IMIDAEPRMQTKP 865
            +    + ++++Q +   EV H +FG      L   +QV  R ++++ +       ++  P
Sbjct: 42   FHETNTLVRWVQTLAIAEVFHSIFGLVSSSPLTTIIQVASRLYLVWGVCYPFSYVIEGSP 101

Query: 866  XVFYLXVVWTCIEXVRYPYYMSQLYKKEFALLTWLXYXXWIXLYPXGIVCEAXIILRN 1039
                + + W+  E +RY +Y   L     A LTWL Y  ++ LYP G   E  ++L++
Sbjct: 102  IYLSMIIAWSITEIIRYAFYAFNLNGDIPAFLTWLRYNTFLILYPIGAGSEFLLVLKS 159


>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
 Frame = +2

Query: 134 PFVYWAQT-------ESTISLKIDLKNALKPDVKVLDNNVIFTAKGTGARGESQYEFNLD 292
           P V WAQ        ++ I L + + +A+ P + +    ++  +K +GA   + Y   +D
Sbjct: 8   PEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPEKLVIDSK-SGAN--AHYAVQID 64

Query: 293 LFSNIKSFEPGGEHITLRVFENRIELILQKVKPVWWPRLTAQPQKPAWLKINFDLWKSED 472
            F +I   E     +T R       L  ++++  +WPRLT +  +  WL+ +FD W  ED
Sbjct: 65  FFKDI-DVEKSKYSVTGRYIF--FVLYKKELQEEFWPRLTKEKLRLHWLRTDFDRWVDED 121

Query: 473 GQESDEE 493
            QE+  E
Sbjct: 122 EQEAQPE 128


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 33.9 bits (74), Expect = 0.043
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -3

Query: 505 YVTLLFVTFLAVFRFPQIKIYLQPGRFLWLCCETRPPYRFHLLQDQLDSVFEHSKCDMFS 326
           YV L+F  +L      + +I L P  F W   +  P Y    L   LD++F       F+
Sbjct: 255 YVDLIFAAYLLKAGIAK-EIVLHPKDFPWFVSDVLP-YDIEYLLTNLDTIFPTESVTKFA 312

Query: 325 TGLKTFN 305
           T L++F+
Sbjct: 313 TDLRSFS 319


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 464 SEDGQESDEEKRDVMRDYPGMYDQLHQEEMGYRKEDLKKVYLFIY 598
           S++  E+   K    + YPG Y  LH E+     E L KV  +IY
Sbjct: 227 SKEFYENAGTKDKTYQSYPGFYHSLHIEKKPEVYEYLDKVAAWIY 271


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 631 YIHVSNKLEKIVDKQVNFLEVFFPISH 551
           Y  VS +  KI D  + + ++F P+SH
Sbjct: 609 YEKVSERFVKIDDSYITYSDIFSPLSH 635


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 477 RKVTKRSVT**ETTQECMISYTKKKWDI 560
           R ++KRS+   + ++E +++YTKK W +
Sbjct: 420 RHISKRSLEVTKLSKEKLLAYTKKLWSL 447


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 236 FTAKGTGARGESQYEFNLDL-FSNIKS 313
           FT    G+R +S YEFN+ +  SNI S
Sbjct: 155 FTVNNVGSRRQSIYEFNIGIPSSNIDS 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,536,048
Number of Sequences: 5004
Number of extensions: 94780
Number of successful extensions: 255
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)