Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M07
         (1162 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical pr...   248   4e-66
U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical pr...    30   2.7  

>Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical
           protein T03F6.1 protein.
          Length = 236

 Score =  248 bits (608), Expect = 4e-66
 Identities = 119/236 (50%), Positives = 158/236 (66%), Gaps = 2/236 (0%)
 Frame = +2

Query: 77  MAPGXIVVSGGRGALGAACVNHFKSFNYWVANIDLNPNEKADFNITVPKDASWVEQEDHV 256
           M+ G ++V GG+GALG+A +  FK   Y V NIDL+ N++AD NI V  + +W EQE  +
Sbjct: 1   MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSI 60

Query: 257 VNELGNALQGQKVNAIICVAGGWAGGNAA-KDLSKQADLMWRQSVWSSSIAATLAAKYXX 433
           + +  ++LQG +V+ + CVAGGWAGG+A+ KD  K ADLM +QSVWSS+IAA LA  +  
Sbjct: 61  LEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLK 120

Query: 434 XXXXXXXXXXXXXXXXXPGMIGYGMAKAAVHQLTKSLGAKDSGLPENSLAVAIMPVTLDT 613
                            P MIGYGMAKAAVH LT SL AKDSGLP+NS  + IMPVTLDT
Sbjct: 121 PGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDT 180

Query: 614 EMNRKWMPKADFSTWTPLTFVAELFEKWMKD-EGRPANGSLVALVTKNNVTDLIIQ 778
            MNRKWMP AD S+WTPL+F++E   KW  +   RP++G+L+ + T+N  + +  Q
Sbjct: 181 PMNRKWMPNADHSSWTPLSFISEHLLKWTTETSSRPSSGALLKITTENGTSTITPQ 236


>U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical
           protein C32E8.3 protein.
          Length = 180

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 608 DTEMNRKWMPKADFSTWTPLTFVAELFEKWMKDEGRPANGSLVALVT 748
           D ++ ++W     F   T      + F+KW+KD G   N ++   +T
Sbjct: 11  DADVKKRWDAFTKFGAATATEMTGKNFDKWLKDAGVLDNKAITGTMT 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,406,765
Number of Sequences: 27780
Number of extensions: 449984
Number of successful extensions: 972
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3161640774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)