Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M07
         (1162 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.73 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    26   0.73 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   5.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   5.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   5.1  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 0.73
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 500 YGMAKAAVHQLTKSLGAKDSGLPENSLAVAIMPVTLDTEMNRKWM 634
           Y  +K A+  LT  L ++ +    N   ++I P  ++T+M  +W+
Sbjct: 161 YLASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDMTAQWL 205


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.8 bits (54), Expect = 0.73
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 424 VLKHWWFVGFNW 459
           + KH WF GFNW
Sbjct: 620 IQKHKWFDGFNW 631


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 152 FNYWVANIDLNPNEKADFNITVPKDASWVE 241
           FN +VA+I+    E  DF + +    SW+E
Sbjct: 15  FNIFVADINSINVEDMDFRVDMFVRQSWIE 44


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 851 Y*NTKYFIHIFKLYLNVDVLLSVEFIVXMYY 943
           Y N  Y  +  KLY N++ +  +   V +YY
Sbjct: 100 YNNNNYNNNCKKLYYNINYIEQIPIPVPVYY 130


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 851 Y*NTKYFIHIFKLYLNVDVLLSVEFIVXMYY 943
           Y N  Y  +  KLY N++ +  +   V +YY
Sbjct: 100 YNNNNYNNNCKKLYYNINYIEQIPIPVPVYY 130


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 851 Y*NTKYFIHIFKLYLNVDVLLSVEFIVXMYY 943
           Y N  Y  +  KLY N++ +  +   V +YY
Sbjct: 100 YNNNNYNNNCKKLYYNINYIEQIPIPVPVYY 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,706
Number of Sequences: 438
Number of extensions: 5479
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39403827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)