Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M06
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   3.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   4.2  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    26   7.4  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   7.4  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   9.7  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +2

Query: 116 GSYVNDHTLKKFKFSHKRDTNSTVKPFEANKSIVHHQNAVQRVSQSTSDFQASARP 283
           GS++N+H L      HK  ++    P     S +H   + Q +  S  + + + +P
Sbjct: 151 GSFINNHIL------HKNTSSHPSSPVNGKSSDIHKSQSYQHLKNSPPNSRTARKP 200


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 179 STVKPFEANKSIVHHQNAVQRVSQSTSDFQASARPQ*TIR*NSI 310
           S + PF  +KS  HH ++  +V +STS+ + S  P  T+  N +
Sbjct: 534 SPISPFSKSKSHNHHPSS--QVEKSTSNSKGSMLPLDTLYNNKL 575


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 284 AVWLRPENRMLIVKPVVLHFDGG 216
           +VWL   N M    P++LH  GG
Sbjct: 105 SVWLAKVNGMTKSDPIILHLHGG 127


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -1

Query: 359 SWSKVFRSS-KIRKTFNVWNFTE-LFIAVWLRPENRMLIV--KPVVLHFDGGQSIY*LRR 192
           SW  +  SS + RK   V   T  L+   W  P    +I+    V L   G +S+Y  R 
Sbjct: 397 SWIFIAVSSLRFRKALRVQGKTHRLYFPNWTYPVGPYIIILLNGVFLFLQGYKSLYPFRL 456

Query: 191 ALRSSWYL 168
           +L  S+Y+
Sbjct: 457 SLFVSYYM 464


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = +3

Query: 327 DFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDXGGPKQFRPRNXLPXVPX 506
           D  GP +  P+ N +  N RP N  + V + ++  +  +  + G P   R    +P  P 
Sbjct: 331 DMHGPTDNSPKKNKVLVNMRPINPSSFVSDRHSPLHPYSVPENGKPNMGR----IPSAPS 386

Query: 507 TKKNXFM 527
             K   M
Sbjct: 387 LSKGRAM 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,088
Number of Sequences: 5004
Number of extensions: 40904
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)