Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M06
         (815 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          25   2.1  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   4.9  

>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +2

Query: 92  VVVCGVWRGSYVNDHT-LKKFKFS----HKRDTNSTVKPFEANKSIVHHQNAVQRVSQST 256
           V+ C +WR   +N HT LK         H +     + P+   ++  H Q++ Q+  QS 
Sbjct: 86  VICCRLWRWPDLNSHTELKPLDVCEYAYHLKKDEVCINPYHYARNESHSQHSQQQ--QSP 143

Query: 257 SDFQASARPQ 286
              Q+S + Q
Sbjct: 144 QQQQSSQQLQ 153


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
 Frame = +3

Query: 303 IPYIKGLPDFGGPKNFGPRPNMMNKNFRP-RNDFNEVKNDYNTK-NDGNQNDXG-----G 461
           +P + GLP   GP+ +   P    +   P R+  N  K       NDG +   G     G
Sbjct: 188 LPGLSGLPGNPGPRGYAGIPGTKGEKGEPARHPENYNKGQKGEPGNDGLEGLPGPQGEVG 247

Query: 462 PKQFRPRNXLPXVPXT 509
           P+ F  R     VP T
Sbjct: 248 PRGFPGRPGEKGVPGT 263


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,874
Number of Sequences: 2352
Number of extensions: 11317
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)