Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M06
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    31   0.75 
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    31   0.75 
AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    29   5.3  
Z74043-3|CAA98546.1|  125|Caenorhabditis elegans Hypothetical pr...    28   9.2  
Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +3

Query: 291 QFGKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDXGGPKQ 470
           Q  ++P  +   +F    NFG   N  N N    NDFN   N +N  N+ N N+   P +
Sbjct: 173 QPSELPDFQPNNNFKYGNNFGQNQNSNNNN----NDFNWNPN-FNWNNNQNNNNNNAPNK 227

Query: 471 FRPRN 485
             P N
Sbjct: 228 QAPMN 232



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 318 GLPDFGGPKNFGPRPNMM-NKNFRPRNDFNEVKNDYNTKNDGNQN 449
           G   FG P      P+   N NF+  N+F + +N  N  ND N N
Sbjct: 167 GFMPFGQPSEL---PDFQPNNNFKYGNNFGQNQNSNNNNNDFNWN 208


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +3

Query: 291 QFGKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDXGGPKQ 470
           Q  ++P  +   +F    NFG   N  N N    NDFN   N +N  N+ N N+   P +
Sbjct: 173 QPSELPDFQPNNNFKYGNNFGQNQNSNNNN----NDFNWNPN-FNWNNNQNNNNNNAPNK 227

Query: 471 FRPRN 485
             P N
Sbjct: 228 QAPMN 232



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 318 GLPDFGGPKNFGPRPNMM-NKNFRPRNDFNEVKNDYNTKNDGNQN 449
           G   FG P      P+   N NF+  N+F + +N  N  ND N N
Sbjct: 167 GFMPFGQPSEL---PDFQPNNNFKYGNNFGQNQNSNNNNNDFNWN 208


>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
 Frame = +3

Query: 258 PIFRPQPDRNEQFGKIPYIKGLPDF-----GGPKNFGPRPNMMNKNFRPRNDFNEVKNDY 422
           P F+ QP + + F K+ Y +   +F      G  NF    N  N N    N +     +Y
Sbjct: 46  PYFQGQPQQQQHF-KMGYSENFENFDENGSSGYNNFADSGNGFNNNGAESNQWGGAPAEY 104

Query: 423 NTKNDGNQNDXG 458
           +  N  ++ D G
Sbjct: 105 SESNLFHRTDSG 116


>Z74043-3|CAA98546.1|  125|Caenorhabditis elegans Hypothetical
           protein T19B10.4b protein.
          Length = 125

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 357 RPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDXGGPKQFRPRNXLP 494
           +P   N N +  N+ N  K   N  N  N+N  GG +    ++  P
Sbjct: 18  QPTTNNNNKKAGNNSNNQKKGNNQNNKNNKNQNGGNRNQNRQHHQP 63


>Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical
           protein T19B10.4a protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 357 RPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDXGGPKQFRPRNXLP 494
           +P   N N +  N+ N  K   N  N  N+N  GG +    ++  P
Sbjct: 18  QPTTNNNNKKAGNNSNNQKKGNNQNNKNNKNQNGGNRNQNRQHHQP 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,375,108
Number of Sequences: 27780
Number of extensions: 247717
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)