Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M06
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   0.63 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   3.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.9  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 363 NMMNKNFRPRNDFNEVKNDYNTKNDGNQNDXGGPKQFRPRNXLPXVP 503
           ++ NK     N++N   N+YN  N  N N     K +   N +  +P
Sbjct: 84  SLSNKTIHNNNNYNN--NNYNNYNYNNNNYNNYKKLYYNINYIEQIP 128


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 336 GPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQND 452
           G K    + N   +N   RN  N   ++ N +ND N+ND
Sbjct: 497 GNKQNDNKQNGNRQNDNKRNG-NRQNDNQNNQNDNNRND 534



 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 372 NKNFRPRNDFNEVKNDYNTKNDGNQND 452
           N N +  ++ N  K + N +ND  QND
Sbjct: 441 NANNQNADNQNANKQNGNRQNDNRQND 467


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 323 KTFNVWNFTELFIAVWL 273
           + F VW F +L+ ++WL
Sbjct: 126 EVFKVWIFGDLWCSIWL 142


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 369 MNKNFRPRNDFNEVKNDYNTKNDGNQN 449
           ++ N++  N +N   N+YN  N+ N N
Sbjct: 318 LSNNYKYSN-YNNYNNNYNNYNNYNNN 343


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 384 RPRNDFNEVKNDYNTKNDGNQNDXG 458
           R R  FN    D +  ND   ND G
Sbjct: 98  RGRTGFNNKNKDGDDNNDYEDNDYG 122



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 333 GGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQND 452
           GG +  G   N     F  +N   +  NDY   + GNQ++
Sbjct: 89  GGSRGRGG--NRGRTGFNNKNKDGDDNNDYEDNDYGNQDN 126


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 345 NFGPRPNMMNKNFRPRNDFNEVKNDYNTKN--DGNQND 452
           N     N+ N N   +ND N+  N  N  N  + NQND
Sbjct: 416 NNNQNDNIQNTN--NQNDNNQKNNKKNANNQKNNNQND 451


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 372 NKNFRPRNDFNEVKNDYNTKNDGN 443
           N N    N++N   N+YN  N  N
Sbjct: 325 NNNNYNNNNYNNNYNNYNNNNYNN 348


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 74  GNLRFGVVVCGVW 112
           GN  FG ++C +W
Sbjct: 105 GNWSFGTIMCDLW 117


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 161 HKRDTNSTVKPFEANKSIVHHQNAVQRVSQSTS 259
           H R    ++ P   N+S + H  A    + STS
Sbjct: 727 HFRQHRDSLSPRVENRSAIVHSEASANANSSTS 759


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,398
Number of Sequences: 438
Number of extensions: 3862
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)