Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_M02
         (1188 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.84 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   4.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   5.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   5.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   5.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   5.9  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 0.84
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 781 NPPFSPTAAPYPVTIVLSPTR 843
           NPP +      PV +++SPTR
Sbjct: 225 NPPNTENNCAQPVVVIMSPTR 245


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 12  PTRAFLTTFNCWSAAAVSP 68
           PT     T NCWS  +  P
Sbjct: 313 PTTVMSPTINCWSLTSSPP 331


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 760 PSWAVCTNPPFSPTAAPYPVTIVLSPT 840
           P+  +C N P  P   P P+  +  PT
Sbjct: 166 PTGFLCNNYPPLPQVPPLPLPPIFPPT 192


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 876 WLLPVAISRVLPGWTQD 826
           W++P+AI  V  GW ++
Sbjct: 254 WIIPIAIFLVSLGWWEN 270


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 876 WLLPVAISRVLPGWTQD 826
           W++P+AI  V  GW ++
Sbjct: 254 WIIPIAIFLVSLGWWEN 270


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 876 WLLPVAISRVLPGWTQD 826
           W++P+AI  V  GW ++
Sbjct: 254 WIIPIAIFLVSLGWWEN 270


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 876 WLLPVAISRVLPGWTQD 826
           W++P+AI  V  GW ++
Sbjct: 254 WIIPIAIFLVSLGWWEN 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,922
Number of Sequences: 336
Number of extensions: 4614
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 34527696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)