Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L24
         (1144 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    30   0.52 
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    30   0.69 
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    29   1.2  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    29   1.6  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    28   2.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   3.7  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    27   3.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.9  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   6.4  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   8.5  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   8.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   8.5  

>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 22/80 (27%), Positives = 36/80 (45%)
 Frame = +1

Query: 112 NNQTKSKGQIINNSLSNNYQMSVRIEKITEPLTLGEGPHWDERQQALYFVSIQDKTIHKY 291
           N+ +  K +   ++L+N   +   I  + E    G  P WDE+++AL F   Q     K 
Sbjct: 492 NSISTRKEEDAASALANLSAVGRSISAVDESAHQGHLPGWDEKEEALIFSLAQGMNPMK- 550

Query: 292 VPTTEKHSKTSLDGRVGFIL 351
           +P T + + T    R  F L
Sbjct: 551 MPLTPRRASTGPRPRPTFQL 570


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = +3

Query: 744 YWRNIQPQKHI*L*TARSTRHSGRYNHRHRRQPLGGRVWRLMRAQDQSSKRRNPTKISNS 923
           Y+ N+ P  +  +  +  T+ +    +++R Q   G++W L      SS   N T  SNS
Sbjct: 155 YYTNLTPVFNSSILFSSITKINFSRGYKYRIQLTDGKIWFLYAFPTSSSSTFNLTLASNS 214

Query: 924 RRTVTSATFGG 956
           + T TS  F G
Sbjct: 215 QLT-TSTKFTG 224


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 22/83 (26%), Positives = 33/83 (39%)
 Frame = +2

Query: 614  MGN*RRLSKLCHYQTALLGT*RKRRFITQIPCSFL*RNLTMM*ILEKYPTPETYLTLNSA 793
            +G+ R +S +  + T L+G           P  F    L +  I+ KY   +TY T  + 
Sbjct: 1106 LGHVRSMSGIGFFHTCLMGVFLGTTTYLLSPVDFANNPLLLFQIISKYKIKDTYATFQTL 1165

Query: 794  VYKAFRTVQPSTPTATFGWPCLE 862
             Y     +Q   PT      CLE
Sbjct: 1166 NY-----IQNQQPTKWPNLSCLE 1183


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 748 QYLHHSQISL*KTAWNLCNKTPFPSSPKQGRLIMTQ 641
           Q L H  +SL + + N+  + P P  P+Q  +I+T+
Sbjct: 233 QQLVHDSVSLRRPSSNIPAQKPIPPKPEQNEIIITK 268


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 795 STRHSG-RYNHRHRRQPLGGRVWRLMRAQDQSSKRRNPTKISNSR 926
           S +++G R NHR R QP   R W L+  +   ++R    K    +
Sbjct: 4   SFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKK 48


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 958  GPPKVAEVTVRRELLIFVGFLRFED*S*ARMSLQTRPPKGC 836
            G  K   ++ + + + FV  L  +D S ARM+ +  PPKGC
Sbjct: 1291 GDEKTLAISEKNDNMSFVQDLP-DDSSLARMNREVSPPKGC 1330


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 565 NFERNKASLYKLDSAKDGKLEKIIETVSLSNGL 663
           N E  K  + K     +G L+  +ET++L NGL
Sbjct: 74  NNEYRKTDVVKNSDTDNGLLKSAVETITLENGL 106


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 434 LPSSPSHCIKRNLRSTPTTNWSVVPSTGNMKPTLPSKL 321
           LPS PS       R TP T  +++P  G M    P K+
Sbjct: 509 LPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKV 546


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 564 TWRIFMTHSSSKQPPTRICFA 502
           T+R F T SS+K P   +CFA
Sbjct: 21  TFRKFTTESSTKSPIADVCFA 41


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +1

Query: 154 LSNNYQMSVRIEKITEPLTLGEGPHWDERQ-QALYFVSIQDKTIHKYVPTTEKHSKTSLD 330
           L   Y M  R+ +   P  L      D  Q  A+   +I+ K + K V  + K  K SL+
Sbjct: 269 LEKGYMMLFRLVRDRSPYFL------DSLQLHAINLSAIKSKHLQKIVVLSSK-GKVSLE 321

Query: 331 GRVGFILPVEGTTDQFVV 384
             +   LP+EGT   F V
Sbjct: 322 SPMSPSLPIEGTFRSFRV 339


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 419  SHCIKRN--LRSTPTTNWSVVPSTGNMKPTLPSKLV 318
            SH    N  + + P  N S VP+TGN+K  L    V
Sbjct: 1095 SHAAHSNNVIGTQPHVNVSAVPNTGNLKDALEGSAV 1130


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = +1

Query: 526  LFAGTMGHEDP---PGNFERNKASLYKLDSAKDGK----LEKIIETVSLS 654
            L    +G E+P   PGNF  +  SLY++  +  G+     E+++ET++ S
Sbjct: 1517 LLRTAVGGENPMALPGNFVNSITSLYEISESFSGETKQAYEQLVETMNKS 1566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,602,937
Number of Sequences: 5004
Number of extensions: 103239
Number of successful extensions: 297
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 609607692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)