Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L24
         (1144 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical pr...    36   0.040
Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   4.6  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   4.6  
Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical pr...    29   8.1  

>U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical
           protein F21F3.1 protein.
          Length = 350

 Score = 36.3 bits (80), Expect = 0.040
 Identities = 25/87 (28%), Positives = 41/87 (47%)
 Frame = +1

Query: 655 NGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGLQGIPDGTTIDTD 834
           +G  WD  EK+F   ++    +   + +     IS  + + D    GL  +P G TID +
Sbjct: 79  SGRVWD--EKSFNDHETFNKDLGVIN-NKTIAIISREKKVIDEFGAGLFYMPHGLTIDNN 135

Query: 835 GNLWVAVFGGSCVLKINPQNGEILQKL 915
           G+ WV   G   V KI+ +  +I+  L
Sbjct: 136 GDYWVTDVGSHQVHKIDAKTQKIVMSL 162


>Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical
           protein M163.5 protein.
          Length = 435

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 16/73 (21%), Positives = 32/73 (43%)
 Frame = +1

Query: 619 KLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGL 798
           +LEK  + + L  G  + L+  A +   + + +  K  + V+   + N  +  +     +
Sbjct: 115 RLEKSCKQLELIRGSMFSLQVDANFSNCNKKPTTAKLPFSVEYFIVENESDFIETFSNAM 174

Query: 799 QGIPDGTTIDTDG 837
              PDG+  D DG
Sbjct: 175 YASPDGSLYDADG 187


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +1

Query: 568 FERNKASLYKLDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDT 747
           F   +  LY+L+     +  K + +     G+ +D  ++  ++TD +  S    D D D 
Sbjct: 398 FVARREGLYRLNPKNPDEEVKKLASGEFIYGIDFDYGDRKIFWTDRLAHSAFSADVD-DE 456

Query: 748 GEISNPRNI 774
           GEIS  + +
Sbjct: 457 GEISQIKKL 465


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +1

Query: 568 FERNKASLYKLDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDT 747
           F   +  LY+L+     +  K + +     G+ +D  ++  ++TD +  S    D D D 
Sbjct: 398 FVARREGLYRLNPKNPDEEVKKLASGEFIYGIDFDYGDRKIFWTDRLAHSAFSADVD-DE 456

Query: 748 GEISNPRNI 774
           GEIS  + +
Sbjct: 457 GEISQIKKL 465


>Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical
           protein F01G4.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 323 LVFECFSVVGTYLCIVLSWMLTKYSAC*RSSQWGPSPSVRGSVI 192
           L F CF    T LC +  + LT   +  R  +W P    + +VI
Sbjct: 141 LHFNCFDAYATKLCYLCYYTLTVLWSLVRGKKWNPLRERKDTVI 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,544,463
Number of Sequences: 27780
Number of extensions: 585059
Number of successful extensions: 1415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3099034026
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)