Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L22
         (1179 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    29   6.4  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   6.4  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   6.4  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    29   8.4  

>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical protein
            F14F7.1 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
 Frame = -2

Query: 1157 PVFXXXPXGXPXSPXGXXXPP-PXRRPG----PXXXXXGXRXAPKTQPPSPRG 1014
            P     P      P G   PP P  RPG    P     G   AP+  PP P+G
Sbjct: 140  PCHPVVPTPCKPCPGGRPGPPGPPGRPGSDGQPGRPATGGGAAPRPGPPGPKG 192


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical protein
            C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = -2

Query: 1163 LAPVFXXXPXGXPXSPXGXXXPPPXRRPGPXXXXXGXRXAPKTQPPSPRGXP 1008
            + P     P   P    G   PPP   PG      G    P   PPS  G P
Sbjct: 277  MPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 328


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA binding
            protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = -2

Query: 1163 LAPVFXXXPXGXPXSPXGXXXPPPXRRPGPXXXXXGXRXAPKTQPPSPRGXP 1008
            + P     P   P    G   PPP   PG      G    P   PPS  G P
Sbjct: 287  MPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 338


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical protein
            C50F7.5 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = -2

Query: 1127 PXSPXGXXXPPPXRRPGPXXXXXGXRXAPKTQPPSPRGXP 1008
            P  P G   PP  R PGP          P  +PP P G P
Sbjct: 243  PPGPPGPPGPPTRRPPGPP-------GPPTRRPPGPPGPP 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,621,020
Number of Sequences: 27780
Number of extensions: 281686
Number of successful extensions: 767
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3224247522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)