Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L20
         (1231 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    61   3e-10
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    28   3.1  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    28   3.1  
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces...    28   3.1  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    27   7.0  

>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 48/175 (27%), Positives = 80/175 (45%)
 Frame = +2

Query: 431 LGDIQISNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLF 610
           LG+++ +  + E     ++++ A   E + + + + L +  +D +VR  LR+ GEP+  F
Sbjct: 9   LGELE-TRPFSEGITRFTKEQAAYYAEQKEKDRIKALKIPYEDSKVREYLRRYGEPITYF 67

Query: 611 GEGPAERRVRLRDLLSYLGEDAINKKXXXXXXXXXXXXXXXXTWYHEGPPTLRQARIWIA 790
           GE    RR RL+ L+    E ++                   T Y +G   L  AR  IA
Sbjct: 68  GEDALARRQRLQQLMI---EKSLEGDNPLDVDQGASENIEKET-YVQGSHELLVARKKIA 123

Query: 791 RYSLPNAKKRLNKAREELKLAGSVRAAAKQESQRKASAFSIYCSQIGXXRPLSLL 955
            YSL  AK RL K RE  ++       + + S        +  SQIG  RP++++
Sbjct: 124 LYSLEKAKLRLKKEREISEIPVPEIVLSGKSSIEHLQKAELMGSQIGGERPIAIV 178


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -3

Query: 221 PIILIGYVLVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYILCCLRFPFKIS 57
           PIIL  +   LIK FK  VF+ I+ +  C       +Y+N N +     FP +IS
Sbjct: 93  PIILNAFEY-LIKEFKKDVFLKISDVFVC-------VYSNLNILYISRSFPDQIS 139


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +2

Query: 779 IWIARYSLP---NAKKRLNKAREELKLAGSV-RAAAKQESQR 892
           +W+A   L    NAKK LNKAR+ ++ +  V  AAA+ E Q+
Sbjct: 406 LWLALARLETYENAKKVLNKARQTIRTSHEVWIAAARLEEQQ 447


>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +2

Query: 461 MELEEEISRDKKALLEEFERRRKARQLNVSTDDDEV 568
           +E EEEI   K+   EE + R+++RQ +  +DDDEV
Sbjct: 100 LEDEEEILAKKR---EEQKLRKRSRQNDDGSDDDEV 132


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 563 EVRRSLRQLGEPVCLFGEGPAERRVRLRDLLSY 661
           E+   LR++ EP+ LFGE       R   LL Y
Sbjct: 128 EIIAKLREMKEPIRLFGESEEATIQRYYSLLKY 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,690,190
Number of Sequences: 5004
Number of extensions: 59327
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)