Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_L20
(1231 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001588-1|AAH01588.1| 522|Homo sapiens PRP4 pre-mRNA processin... 180 1e-44
AL449305-7|CAI10968.1| 522|Homo sapiens PRP4 pre-mRNA processin... 180 1e-44
AF016369-1|AAC51925.1| 522|Homo sapiens U4/U6 small nuclear rib... 180 1e-44
CR457105-1|CAG33386.1| 521|Homo sapiens PRPF4 protein. 179 2e-44
BC007424-1|AAH07424.1| 521|Homo sapiens PRP4 pre-mRNA processin... 179 2e-44
AY572489-1|AAS78572.1| 521|Homo sapiens 60 kDa U4/U6 snRNP-spec... 179 2e-44
AL449305-8|CAI10969.1| 521|Homo sapiens PRP4 pre-mRNA processin... 179 2e-44
AB209797-1|BAD93034.1| 537|Homo sapiens PRPF4 protein variant p... 179 2e-44
AF001687-1|AAB87640.1| 521|Homo sapiens U4/U6 snRNP 60 kDa prot... 176 1e-43
U82756-1|AAC02261.1| 520|Homo sapiens WD splicing factor Hprp4p... 140 9e-33
BC065199-1|AAH65199.1| 453|Homo sapiens family with sequence si... 31 8.6
BC037572-1|AAH37572.1| 453|Homo sapiens family with sequence si... 31 8.6
AF123073-1|AAK01477.1| 453|Homo sapiens C/EBP-induced protein p... 31 8.6
>BC001588-1|AAH01588.1| 522|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog (yeast) protein.
Length = 522
Score = 180 bits (437), Expect = 1e-44
Identities = 97/237 (40%), Positives = 131/237 (55%), Gaps = 2/237 (0%)
Frame = +2
Query: 272 SKQKT-TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI 448
S Q T T + D+ +A + K+ ++YGS G+I I
Sbjct: 8 STQATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINI 67
Query: 449 -SNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPA 625
S E E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPA
Sbjct: 68 TSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPA 127
Query: 626 ERRVRLRDLLSYLGEDAINKKXXXXXXXXXXXXXXXXTWYHEGPPTLRQARIWIARYSLP 805
ERR RLR++LS +G DA+ K TWYHEGP +L+ AR+WIA YSLP
Sbjct: 128 ERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLP 187
Query: 806 NAKKRLNKAREELKLAGSVRAAAKQESQRKASAFSIYCSQIGXXRPLSLLXVQPGQQ 976
A KRL +AR ++ + R + QE + + + +CSQIG RP+S P +
Sbjct: 188 RAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSK 244
>AL449305-7|CAI10968.1| 522|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog (yeast) protein.
Length = 522
Score = 180 bits (437), Expect = 1e-44
Identities = 97/237 (40%), Positives = 131/237 (55%), Gaps = 2/237 (0%)
Frame = +2
Query: 272 SKQKT-TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI 448
S Q T T + D+ +A + K+ ++YGS G+I I
Sbjct: 8 STQATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINI 67
Query: 449 -SNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPA 625
S E E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPA
Sbjct: 68 TSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPA 127
Query: 626 ERRVRLRDLLSYLGEDAINKKXXXXXXXXXXXXXXXXTWYHEGPPTLRQARIWIARYSLP 805
ERR RLR++LS +G DA+ K TWYHEGP +L+ AR+WIA YSLP
Sbjct: 128 ERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLP 187
Query: 806 NAKKRLNKAREELKLAGSVRAAAKQESQRKASAFSIYCSQIGXXRPLSLLXVQPGQQ 976
A KRL +AR ++ + R + QE + + + +CSQIG RP+S P +
Sbjct: 188 RAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSK 244
>AF016369-1|AAC51925.1| 522|Homo sapiens U4/U6 small nuclear
ribonucleoprotein hPrp4 protein.
Length = 522
Score = 180 bits (437), Expect = 1e-44
Identities = 97/237 (40%), Positives = 131/237 (55%), Gaps = 2/237 (0%)
Frame = +2
Query: 272 SKQKT-TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI 448
S Q T T + D+ +A + K+ ++YGS G+I I
Sbjct: 8 STQATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINI 67
Query: 449 -SNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPA 625
S E E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPA
Sbjct: 68 TSGEVFEIEERISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPA 127
Query: 626 ERRVRLRDLLSYLGEDAINKKXXXXXXXXXXXXXXXXTWYHEGPPTLRQARIWIARYSLP 805
ERR RLR++LS +G DA+ K TWYHEGP +L+ AR+WIA YSLP
Sbjct: 128 ERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLP 187
Query: 806 NAKKRLNKAREELKLAGSVRAAAKQESQRKASAFSIYCSQIGXXRPLSLLXVQPGQQ 976
A KRL +AR ++ + R + QE + + + +CSQIG RP+S P +
Sbjct: 188 RAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSK 244
>CR457105-1|CAG33386.1| 521|Homo sapiens PRPF4 protein.
Length = 521
Score = 179 bits (436), Expect = 2e-44
Identities = 94/231 (40%), Positives = 128/231 (55%), Gaps = 1/231 (0%)
Frame = +2
Query: 287 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 463
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 464 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRL 643
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPAERR RL
Sbjct: 73 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERL 132
Query: 644 RDLLSYLGEDAINKKXXXXXXXXXXXXXXXXTWYHEGPPTLRQARIWIARYSLPNAKKRL 823
R++LS +G DA+ K TWYHEGP +L+ AR+WIA YSLP A KRL
Sbjct: 133 RNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRL 192
Query: 824 NKAREELKLAGSVRAAAKQESQRKASAFSIYCSQIGXXRPLSLLXVQPGQQ 976
+AR ++ + R + QE + + + +CSQIG RP+S P +
Sbjct: 193 EEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSK 243
>BC007424-1|AAH07424.1| 521|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog (yeast) protein.
Length = 521
Score = 179 bits (436), Expect = 2e-44
Identities = 94/231 (40%), Positives = 128/231 (55%), Gaps = 1/231 (0%)
Frame = +2
Query: 287 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 463
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 464 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRL 643
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPAERR RL
Sbjct: 73 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERL 132
Query: 644 RDLLSYLGEDAINKKXXXXXXXXXXXXXXXXTWYHEGPPTLRQARIWIARYSLPNAKKRL 823
R++LS +G DA+ K TWYHEGP +L+ AR+WIA YSLP A KRL
Sbjct: 133 RNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRL 192
Query: 824 NKAREELKLAGSVRAAAKQESQRKASAFSIYCSQIGXXRPLSLLXVQPGQQ 976
+AR ++ + R + QE + + + +CSQIG RP+S P +
Sbjct: 193 EEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSK 243
>AY572489-1|AAS78572.1| 521|Homo sapiens 60 kDa U4/U6
snRNP-specific spliceosomal protein protein.
Length = 521
Score = 179 bits (436), Expect = 2e-44
Identities = 94/231 (40%), Positives = 128/231 (55%), Gaps = 1/231 (0%)
Frame = +2
Query: 287 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 463
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 464 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRL 643
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPAERR RL
Sbjct: 73 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERL 132
Query: 644 RDLLSYLGEDAINKKXXXXXXXXXXXXXXXXTWYHEGPPTLRQARIWIARYSLPNAKKRL 823
R++LS +G DA+ K TWYHEGP +L+ AR+WIA YSLP A KRL
Sbjct: 133 RNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRL 192
Query: 824 NKAREELKLAGSVRAAAKQESQRKASAFSIYCSQIGXXRPLSLLXVQPGQQ 976
+AR ++ + R + QE + + + +CSQIG RP+S P +
Sbjct: 193 EEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSK 243
>AL449305-8|CAI10969.1| 521|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog (yeast) protein.
Length = 521
Score = 179 bits (436), Expect = 2e-44
Identities = 94/231 (40%), Positives = 128/231 (55%), Gaps = 1/231 (0%)
Frame = +2
Query: 287 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 463
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 464 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRL 643
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPAERR RL
Sbjct: 73 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERL 132
Query: 644 RDLLSYLGEDAINKKXXXXXXXXXXXXXXXXTWYHEGPPTLRQARIWIARYSLPNAKKRL 823
R++LS +G DA+ K TWYHEGP +L+ AR+WIA YSLP A KRL
Sbjct: 133 RNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRL 192
Query: 824 NKAREELKLAGSVRAAAKQESQRKASAFSIYCSQIGXXRPLSLLXVQPGQQ 976
+AR ++ + R + QE + + + +CSQIG RP+S P +
Sbjct: 193 EEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSK 243
>AB209797-1|BAD93034.1| 537|Homo sapiens PRPF4 protein variant
protein.
Length = 537
Score = 179 bits (436), Expect = 2e-44
Identities = 94/231 (40%), Positives = 128/231 (55%), Gaps = 1/231 (0%)
Frame = +2
Query: 287 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 463
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 29 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 88
Query: 464 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRL 643
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPAERR RL
Sbjct: 89 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERL 148
Query: 644 RDLLSYLGEDAINKKXXXXXXXXXXXXXXXXTWYHEGPPTLRQARIWIARYSLPNAKKRL 823
R++LS +G DA+ K TWYHEGP +L+ AR+WIA YSLP A KRL
Sbjct: 149 RNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRL 208
Query: 824 NKAREELKLAGSVRAAAKQESQRKASAFSIYCSQIGXXRPLSLLXVQPGQQ 976
+AR ++ + R + QE + + + +CSQIG RP+S P +
Sbjct: 209 EEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSK 259
>AF001687-1|AAB87640.1| 521|Homo sapiens U4/U6 snRNP 60 kDa protein
protein.
Length = 521
Score = 176 bits (429), Expect = 1e-43
Identities = 93/231 (40%), Positives = 127/231 (54%), Gaps = 1/231 (0%)
Frame = +2
Query: 287 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 463
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 464 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRL 643
E+EE IS + LL EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPAERR RL
Sbjct: 73 EIEEHISERQAELLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERL 132
Query: 644 RDLLSYLGEDAINKKXXXXXXXXXXXXXXXXTWYHEGPPTLRQARIWIARYSLPNAKKRL 823
+++LS + DA+ K TWYHEGP +L+ AR+WIA YSLP A KRL
Sbjct: 133 KNILSVVDTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRL 192
Query: 824 NKAREELKLAGSVRAAAKQESQRKASAFSIYCSQIGXXRPLSLLXVQPGQQ 976
+AR ++ + R + QE + + + +CSQIG RP+S P +
Sbjct: 193 EEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSK 243
>U82756-1|AAC02261.1| 520|Homo sapiens WD splicing factor Hprp4p
protein.
Length = 520
Score = 140 bits (339), Expect = 9e-33
Identities = 80/231 (34%), Positives = 114/231 (49%), Gaps = 1/231 (0%)
Frame = +2
Query: 287 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 463
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 464 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRL 643
E+EE + D++ + + DD EV+ LR LGEP+ LFGEGPAERR RL
Sbjct: 73 EIEEISASDRQKYWLSLREGSEPGRSMFPPDDSEVKACLRALGEPITLFGEGPAERRERL 132
Query: 644 RDLLSYLGEDAINKKXXXXXXXXXXXXXXXXTWYHEGPPTLRQARIWIARYSLPNAKKRL 823
R++LS +G DA+ K TWYHEGP +L+ AR+WIA YSLP A KRL
Sbjct: 133 RNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLK-ARLWIANYSLPRAMKRL 191
Query: 824 NKAREELKLAGSVRAAAKQESQRKASAFSIYCSQIGXXRPLSLLXVQPGQQ 976
+AR ++ + R + QE + + + +CSQIG RP+S P +
Sbjct: 192 EEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSK 242
>BC065199-1|AAH65199.1| 453|Homo sapiens family with sequence
similarity 117, member A protein.
Length = 453
Score = 31.1 bits (67), Expect = 8.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 1064 GGPWAPGRGGQSGTDQTLXQPXPA 993
GG W PGRGG G + P PA
Sbjct: 11 GGAWGPGRGGAGGLRRGCSPPAPA 34
>BC037572-1|AAH37572.1| 453|Homo sapiens family with sequence
similarity 117, member A protein.
Length = 453
Score = 31.1 bits (67), Expect = 8.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 1064 GGPWAPGRGGQSGTDQTLXQPXPA 993
GG W PGRGG G + P PA
Sbjct: 11 GGAWGPGRGGAGGLRRGCSPPAPA 34
>AF123073-1|AAK01477.1| 453|Homo sapiens C/EBP-induced protein
protein.
Length = 453
Score = 31.1 bits (67), Expect = 8.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 1064 GGPWAPGRGGQSGTDQTLXQPXPA 993
GG W PGRGG G + P PA
Sbjct: 11 GGAWGPGRGGAGGLRRGCSPPAPA 34
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,319,422
Number of Sequences: 237096
Number of extensions: 2584904
Number of successful extensions: 8021
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7990
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17449654910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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