Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_L20
(1231 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical pr... 128 8e-30
Z81074-3|CAB03039.2| 352|Caenorhabditis elegans Hypothetical pr... 33 0.55
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 32 0.96
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 32 0.96
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z81143-1|CAB03513.1| 381|Caenorhabditis elegans Hypothetical pr... 31 2.2
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 2.9
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 29 5.1
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 6.7
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 6.7
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 29 6.7
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 6.7
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 6.7
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 6.7
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 29 8.9
Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical pr... 29 8.9
Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical pr... 29 8.9
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 8.9
U41027-4|AAC48196.2| 455|Caenorhabditis elegans Hypothetical pr... 29 8.9
U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical pr... 29 8.9
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 29 8.9
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 29 8.9
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 29 8.9
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 29 8.9
>Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical
protein C36B1.5 protein.
Length = 496
Score = 128 bits (309), Expect = 8e-30
Identities = 69/169 (40%), Positives = 95/169 (56%), Gaps = 1/169 (0%)
Frame = +2
Query: 446 ISNEYMELEEEI-SRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGP 622
+S E ME+ + SR + EF+RRR+AR L + TDD +V+ LR L +P+CLFGE
Sbjct: 40 VSLERMEVSNQADSRHDAEMFAEFDRRRRARTLTLPTDDVQVKLKLRALNQPICLFGEDA 99
Query: 623 AERRVRLRDLLSYLGEDAINKKXXXXXXXXXXXXXXXXTWYHEGPPTLRQARIWIARYSL 802
+RR RLR LLS + ED I TWYH GP LR AR+ IA +SL
Sbjct: 100 LDRRERLRALLSTMSEDEIAAVLHTDEVNADKADEETVTWYHRGPIELRMARVSIADFSL 159
Query: 803 PNAKKRLNKAREELKLAGSVRAAAKQESQRKASAFSIYCSQIGXXRPLS 949
AK RL+KAREE +A A+QE+ + +++ SQ+ RP++
Sbjct: 160 RKAKLRLDKAREEAARPAHEKALARQEAHKWVQQINLHASQVADTRPVA 208
>Z81074-3|CAB03039.2| 352|Caenorhabditis elegans Hypothetical
protein F32B6.3 protein.
Length = 352
Score = 32.7 bits (71), Expect = 0.55
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = +2
Query: 437 DIQISNEYMELEEEISRDKKA----LLEEFERRRKAR------QLNVSTDDDEVRRSLRQ 586
+++ + EY ++EI+ K+ +L+E R K +++ T E++ LRQ
Sbjct: 37 EMKRNQEYERKQQEIASKKRKVDDEILQESSSRTKPAPVENESEIDEKTPMSEIQTRLRQ 96
Query: 587 LGEPVCLFGEGPAERRVRLRDL 652
P+ LFGE + R RL L
Sbjct: 97 RNHPIMLFGETDIDVRKRLHQL 118
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter than
wild-typeprotein 13 protein.
Length = 302
Score = 31.9 bits (69), Expect = 0.96
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 1091 EGRPGSRCQGGPWAP-GRGGQSGTDQTLXQPXP 996
+G PGS + GP P G GQ G D T QP P
Sbjct: 218 KGEPGSTGEPGPVGPPGPSGQPGNDGTPGQPGP 250
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.elegans
collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 31.9 bits (69), Expect = 0.96
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 1091 EGRPGSRCQGGPWAP-GRGGQSGTDQTLXQPXP 996
+G PGS + GP P G GQ G D T QP P
Sbjct: 218 KGEPGSTGEPGPVGPPGPSGQPGNDGTPGQPGP 250
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical protein
F33A8.3 protein.
Length = 208
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 1097 RGEGRPGSRCQGGPWAPGRGGQSGTDQ 1017
RG GR G R +GG GRGGQ G +
Sbjct: 181 RGGGRRGGRGRGGRGRGGRGGQGGQSE 207
>Z81143-1|CAB03513.1| 381|Caenorhabditis elegans Hypothetical protein
ZK265.2 protein.
Length = 381
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 1112 GQFPLRGEGRPGS-RCQGGPWAPGRGGQSGTDQTLXQPXP 996
GQ RG+G+PG G P PGR G+ G + Q P
Sbjct: 209 GQNGTRGQGQPGPVGAPGAPGGPGRDGEPGENGQDGQQGP 248
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.3 bits (65), Expect = 2.9
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 443 QISNEYMELEEEISRDKKALLE-EFERRRKARQLNVSTDDDE 565
++ + EE S+ +K E E ER+RK ++++V +DDD+
Sbjct: 152 ELEERNRKAEEAASKRRKREAEVEAERKRKRKEISVDSDDDD 193
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical protein
B0024.1 protein.
Length = 297
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 1088 GRPGSRCQGGPWAPGRGGQSG 1026
G+ G R G P APGR GQ G
Sbjct: 210 GKDGRRGHGSPGAPGRAGQPG 230
>Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical protein
M18.1 protein.
Length = 337
Score = 29.5 bits (63), Expect = 5.1
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Frame = -3
Query: 1124 PEXXGQFPLRGEGRPGSRCQGGPWAP----GRGGQSGTDQTLXQPXPARXDQH 978
P G R GRPG+ GP P G GQ G D QP D H
Sbjct: 197 PGAPGAPGTRSVGRPGTAGSPGPQGPPGQNGNDGQPGNDGAPGQPGQPGPDGH 249
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 29.5 bits (63), Expect = 5.1
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -3
Query: 1094 GEGRPGSRCQGGPWAPGRGGQSGTDQTLXQP 1002
G G PG G P APG GQ+GT T P
Sbjct: 234 GSGTPGQ--PGAPGAPGHPGQAGTPGTPGAP 262
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical protein
W01B6.7 protein.
Length = 301
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 1094 GEGRPGSRCQGGPWAPGRGGQSG 1026
G G PG+ QGGP PG G G
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPG 227
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 1094 GEGRPGSRCQGGPWAPGRGGQSG 1026
G G PG+ QGGP PG G G
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPG 227
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein 139
protein.
Length = 310
Score = 29.1 bits (62), Expect = 6.7
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 1124 PEXXGQFPLRG-EGRPGSRCQGGPWAPGRGGQSG 1026
P GQ RG +G+PG+ G P APG+ GQSG
Sbjct: 251 PGGPGQPGQRGSDGQPGN--DGQPGAPGQPGQSG 282
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein 91
protein.
Length = 278
Score = 29.1 bits (62), Expect = 6.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 1109 QFPLRGEGRPGSRCQGGPWAPGRGGQSGTD 1020
Q P+ +G+PGS G P APG G G D
Sbjct: 213 QGPVGSDGQPGSA--GAPGAPGPAGAPGVD 240
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 2 (col-2) gene, complete cds. ).
Length = 301
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 1094 GEGRPGSRCQGGPWAPGRGGQSG 1026
G G PG+ QGGP PG G G
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPG 227
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 1094 GEGRPGSRCQGGPWAPGRGGQSG 1026
G G PG+ QGGP PG G G
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPG 227
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical protein
C50B6.4 protein.
Length = 291
Score = 28.7 bits (61), Expect = 8.9
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 1091 EGRPGSRCQGGP-WAPGRGGQSGTDQTLXQPXPAR 990
+G+PG Q G APG+ GQ G+D P PAR
Sbjct: 239 DGQPGQPGQDGEAGAPGQDGQPGSDAAYC-PCPAR 272
>Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical
protein F40F9.6b protein.
Length = 910
Score = 28.7 bits (61), Expect = 8.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 440 IQISNEYMELEEEISRDKKALLEEFERRRKARQ 538
+ I NE+ EL +++RD K +EEF + + ++
Sbjct: 146 VSIFNEFDELVAQLNRDGKLKVEEFRTKEEGKE 178
>Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical
protein F40F9.6a protein.
Length = 924
Score = 28.7 bits (61), Expect = 8.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 440 IQISNEYMELEEEISRDKKALLEEFERRRKARQ 538
+ I NE+ EL +++RD K +EEF + + ++
Sbjct: 160 VSIFNEFDELVAQLNRDGKLKVEEFRTKEEGKE 192
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 28.7 bits (61), Expect = 8.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 1091 EGRPGSRCQGGPWAPGRGGQSGTDQTLXQPXPA 993
+G PG GGP PG GG G +P PA
Sbjct: 171 KGPPGP--PGGPGGPGEGGDGGRPGNPGRPGPA 201
>U41027-4|AAC48196.2| 455|Caenorhabditis elegans Hypothetical
protein R08E3.3a protein.
Length = 455
Score = 28.7 bits (61), Expect = 8.9
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 431 LGDIQISNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRR 574
+G I N+ ME + +I + K + + + + N+ TDD+E+RR
Sbjct: 285 MGKIAELNKQMEEDTQIIENTKQANAQKKLQMREELKNLGTDDEEIRR 332
>U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical
protein R08E3.3b protein.
Length = 516
Score = 28.7 bits (61), Expect = 8.9
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 431 LGDIQISNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRR 574
+G I N+ ME + +I + K + + + + N+ TDD+E+RR
Sbjct: 285 MGKIAELNKQMEEDTQIIENTKQANAQKKLQMREELKNLGTDDEEIRR 332
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 28.7 bits (61), Expect = 8.9
Identities = 16/70 (22%), Positives = 37/70 (52%)
Frame = +2
Query: 455 EYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERR 634
E+ +++EE ++ + + + + KA++ + D+VRRSL+ + E + E +
Sbjct: 743 EFQKVKEEFQKEVEKVKKVEKELEKAKESDFKVYLDDVRRSLKNVRETI----EETRKYE 798
Query: 635 VRLRDLLSYL 664
+R D L ++
Sbjct: 799 IRFLDSLGFM 808
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 28.7 bits (61), Expect = 8.9
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 1103 PLRGEGRPGSRCQGGPWAPGRGGQSG 1026
P G+PGS G P APG+ GQSG
Sbjct: 259 PSGAPGQPGS--DGNPGAPGQPGQSG 282
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 28.7 bits (61), Expect = 8.9
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 1091 EGRPGSRCQGGP-WAPGRGGQSGTDQTLXQPXPAR 990
+G+PG Q G APG+ GQ G+D P PAR
Sbjct: 239 DGQPGQPGQDGEAGAPGQDGQPGSDAAYC-PCPAR 272
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen protein
143 protein.
Length = 319
Score = 28.7 bits (61), Expect = 8.9
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 1088 GRPGSRCQGG-PWAPGRGGQSGTDQTLXQPXPARXDQH 978
GRPG + G P PGR G +GT P P+ H
Sbjct: 208 GRPGPQGPAGAPGQPGRSGGAGTPGPQGPPGPSGQPGH 245
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,990,416
Number of Sequences: 27780
Number of extensions: 376759
Number of successful extensions: 1625
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3401633308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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