Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_L18
(1212 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0050 + 25967604-25967685,25967780-25967891,25969238-259693... 48 1e-05
09_05_0007 - 20036981-20037159,20037690-20037943,20038103-200383... 34 0.20
05_03_0151 + 8955617-8955733,8956771-8956885,8957247-8957269,895... 34 0.26
07_01_0570 + 4228567-4228852,4229198-4229217 31 2.4
06_01_0785 - 5873244-5873357,5873458-5873562,5874333-5874424,587... 30 3.2
09_06_0030 - 20341141-20341235,20341336-20341469,20341563-20341684 29 5.6
03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407... 29 5.6
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 29 7.4
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 29 7.4
01_06_0473 - 29598704-29599642 29 9.7
>01_06_0050 +
25967604-25967685,25967780-25967891,25969238-25969361,
25969486-25969527,25969622-25969735,25969843-25969905,
25970741-25970868,25972198-25972279,25972372-25972423,
25972515-25972612,25972845-25973006,25973484-25973573,
25973700-25973777
Length = 408
Score = 48.4 bits (110), Expect = 1e-05
Identities = 27/109 (24%), Positives = 50/109 (45%)
Frame = +1
Query: 607 TTSVAVFIALIFINFGCAMHWPTVRDVIKRPIGPAIGMVGQFLFMPLSSFGLGYVIFPNS 786
T V + + ++ G + + R ++ P +G + Q+L P+ F + + ++
Sbjct: 126 TDLFTVGLGFLMLSMGLTLTFEDFRRCMRNPWTVGVGFLAQYLIKPMLGFAIAMTLKLSA 185
Query: 787 PAMRLGMFFTGVAPGGGASKRVDLHSRRXLNLSLAMTTISTICSFGLCP 933
P + G+ PGG AS S+ + LS+ MTT STI + + P
Sbjct: 186 P-LATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTP 233
>09_05_0007 -
20036981-20037159,20037690-20037943,20038103-20038355,
20038447-20038640,20039122-20039252,20039378-20039488,
20039834-20039932
Length = 406
Score = 34.3 bits (75), Expect = 0.20
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Frame = +1
Query: 631 ALIFINFGCAMHWPTVRD---VIKRPIGPAIGMVGQFLFMPLSSF---GLGYVIFPNSPA 792
AL F+ F ++ +V+D I+RP A G VGQF+ P F L IF A
Sbjct: 119 ALGFLMFAVGVN-SSVKDFIEAIQRPDAIAAGYVGQFIIKPFLGFLFGTLAVTIFNLPTA 177
Query: 793 MRLGMFFTGVAPGGGASKRVD-LHSRRXLNLSLAMTTISTICSFGLCP 933
+ G+ G S L LS+ MT++ST + + P
Sbjct: 178 LGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTATAVFVTP 225
>05_03_0151 +
8955617-8955733,8956771-8956885,8957247-8957269,
8958161-8958164,8958269-8958366
Length = 118
Score = 33.9 bits (74), Expect = 0.26
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = -2
Query: 650 KLIKIKAMNTATLVVNIVSMTRSTLVITTGTVPLVTENVSASLFTSSTKFVLPIKFPLMR 471
K I +K +T L+ +++ RS L I T + VTE S SL+ + VL L
Sbjct: 38 KKIGVKTQDTYALLT-MINHCRSILYIETQLLKYVTEKESDSLYVGIIQVVLRQPAMLQH 96
Query: 470 ILPFHV 453
ILP+++
Sbjct: 97 ILPYNI 102
>07_01_0570 + 4228567-4228852,4229198-4229217
Length = 101
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +3
Query: 543 RHQRYGSRGDHEGRTGHRHDIHH 611
RH R G RGDH G G H I H
Sbjct: 24 RHYRDGWRGDHHGGHGQEHIISH 46
>06_01_0785 -
5873244-5873357,5873458-5873562,5874333-5874424,
5874525-5874594,5875080-5875202,5875287-5875372,
5875547-5875648,5875874-5876096,5876217-5876282,
5876407-5876497,5876574-5876701,5877734-5877749,
5878171-5878318,5878440-5878511,5878586-5878690,
5879122-5879291,5880093-5880424
Length = 680
Score = 30.3 bits (65), Expect = 3.2
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 379 KISSQNEQLAWAEWNSSNLYEKHDSTWKGKIRINGNFIGRTNLVLEV 519
+I N+++AW EW+ N+ W G +G+ R EV
Sbjct: 242 RIDHNNKRMAWIEWSHPNMPWDKSELWVGYFSESGDLTKRVEHTNEV 288
>09_06_0030 - 20341141-20341235,20341336-20341469,20341563-20341684
Length = 116
Score = 29.5 bits (63), Expect = 5.6
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = +1
Query: 307 VKMDEYKY---VDVSIEGSGLEL----NDAFKISSQNEQLAWAEWNSSNLYEKHDSTW 459
V MD Y VDV+ G LEL ND F S+ + EW + +YE D W
Sbjct: 50 VSMDGTPYLRKVDVAAYGDYLELVEALNDMFYCSTIGLMDGYGEWEHAVVYEDGDGDW 107
>03_05_1007 -
29637911-29638333,29640095-29640282,29640688-29640773,
29641108-29641173,29641289-29641331,29641398-29642328
Length = 578
Score = 29.5 bits (63), Expect = 5.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 839 APPPGATPVKNIPRRIAGEFGNIT*PRPKELSGIK 735
APPPG T P +G T P E+SGI+
Sbjct: 83 APPPGETSPSPSPPSAEARYGGGTAQTPPEISGIR 117
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 29.1 bits (62), Expect = 7.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 822 SPRGRRLQTCGPSFSAVXQPVPRHDDHIY 908
SP G RL+ C S A P PRH H+Y
Sbjct: 504 SPPGSRLR-CTASARATSPPPPRHPPHLY 531
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 29.1 bits (62), Expect = 7.4
Identities = 19/55 (34%), Positives = 22/55 (40%)
Frame = -1
Query: 819 AREEHPETHRGRVREYHVAQTEGTEWHKKELSDHSYGGSDRSLDDVTHRRPVHRT 655
A E H ET RE+ Q E EWH E S + D D P+ RT
Sbjct: 453 AEELHSETMEDDAREHDHLQDEHDEWHDDE-SHGTENWQDDFQDSPLDMGPIPRT 506
>01_06_0473 - 29598704-29599642
Length = 312
Score = 28.7 bits (61), Expect = 9.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 652 GCAMHWPTVRDVIKRPIGP 708
GCA W TV ++ RP GP
Sbjct: 147 GCAPEWRTVASLLPRPFGP 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,456,721
Number of Sequences: 37544
Number of extensions: 669312
Number of successful extensions: 1781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1780
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3713048988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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