Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L16
         (1254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    29   1.3  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   4.1  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   9.5  

>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 417 NSLAKMSSALESNQTINSSMDISQCDSNESMETIKT 524
           N L ++   + S +T N+SM+   CDSNE++ T+ +
Sbjct: 112 NLLLRLQGRMNSART-NTSMNPYSCDSNENLSTLSS 146


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 390 VPNKKIEYFNSLAK-MSSALESNQTINSSMDISQCDSNESMETIKTKQYL 536
           V N  + YF   AK + +A++  Q  NSS  +  C+SNE +  +  K +L
Sbjct: 514 VSNINLGYFEDAAKHLLAAIDIIQ--NSSTSMESCESNEELWEMLRKVFL 561


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 432 MSSALESNQTIN-SSMDI-SQCDSNESMETIKTKQ 530
           M  ++E+   +N S + I S CD   S+ET+KTK+
Sbjct: 7   MQMSVETETVLNVSQVQIPSSCDRKASLETLKTKK 41


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 429  KMSSALESNQTINSSMDISQC--DSNESMETIKTKQYL 536
            ++ +AL  N  +NS  DI  C  +SNESM  +  K++L
Sbjct: 1170 RLYNALSKNYEMNS--DIKDCIVESNESMNYLLLKRFL 1205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,827
Number of Sequences: 5004
Number of extensions: 56093
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)