Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L16
         (1254 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...    32   0.98 
U55375-6|AAC69046.2|  431|Caenorhabditis elegans Hypothetical pr...    30   4.0  
U41264-11|AAA82431.2|  550|Caenorhabditis elegans Hypothetical p...    29   5.2  

>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score = 31.9 bits (69), Expect = 0.98
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 639 EVELKNDLTEALRKLRTLCPKIHWIGXTDSHVVGCGSSGMCIWTEIDNQPLGP 797
           E + ++++ + LRK RT+      +G   SH  G G S   + +  D Q +GP
Sbjct: 86  EEQKQHEMLDMLRKFRTMNIDYEIVGFYQSHQFGAGFSHDLVESMFDYQAMGP 138


>U55375-6|AAC69046.2|  431|Caenorhabditis elegans Hypothetical
           protein K03E6.7 protein.
          Length = 431

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +3

Query: 387 KVPNKKIEYFNSLAKMSSALESNQTINSSMDISQCDSNESMETIKTKQYLRNLLKARIFL 566
           +V N  I+    + +  +A ES     +   +   +   +ME  K  +Y   + K+R++ 
Sbjct: 149 EVLNHHIQRVREVEEERTAAESLHASKAHAMLHLAEKIRAME--KDNRYA--IKKSRLYF 204

Query: 567 GRYLERXLIDERIGYRDIVLLSTAEV-ELKNDLTEALRKLRTLCPKIH 707
            + LE   I E    +  +L   AEV + KND T +LR L  +  +IH
Sbjct: 205 EKRLEFTKILE--AQKATILCLEAEVRQKKNDYTTSLRNLERISERIH 250


>U41264-11|AAA82431.2|  550|Caenorhabditis elegans Hypothetical
           protein F10E7.1 protein.
          Length = 550

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
 Frame = +3

Query: 357 DKLI*F*THXKVPNKKIEYFNSLAK-MSSALESNQTINSSMDISQCDSNESMETIK---- 521
           DKLI   +H  VPN +I Y+  + + +   + SN  + +   I   ++ E   TI     
Sbjct: 279 DKLILRLSHSAVPNPRIWYYKYITREVIDIIISNWKVKTVKLIITINNMEEFITIPEQFH 338

Query: 522 --TKQYLRNLLKARIFLGRYLERXLIDERIGYRDIVLL--STAEVELKNDLTEALRKL 683
             TK+ L + +         LE+  +D R G   +V +   +AE+   +++ E +R++
Sbjct: 339 LFTKERLGDPISTHPISKNSLEKVELDLRFGVNTLVKMFHRSAEILPTDNIIENVRRI 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,675,839
Number of Sequences: 27780
Number of extensions: 309329
Number of successful extensions: 633
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3485108972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)