Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L16
         (1254 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   1.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   1.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   1.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 393 PNKKIEYFNSLAKMSSALES-NQTINSSMDISQCDSNESMETIKTKQYLRN 542
           PN KIE F ++ K+ +  E  + TIN+ + + +  +++    IK +QY  N
Sbjct: 447 PNLKIESF-TVDKLITYFEQFDTTINNGLLLEEQRNDDKPFLIKIRQYRLN 496


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 393 PNKKIEYFNSLAKMSSALES-NQTINSSMDISQCDSNESMETIKTKQYLRN 542
           PN KIE F ++ K+ +  E  + TIN+ + + +  +++    IK +QY  N
Sbjct: 447 PNLKIESF-TVDKLITYFEQFDTTINNGLLLEEQRNDDKPFLIKIRQYRLN 496


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 411 YFNSLAKMSSALESNQTINSSMDISQCDS 497
           Y ++ AK+  A     T + SMDI  CD+
Sbjct: 551 YADTHAKLVQAAFEQNTTDQSMDIDVCDN 579


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,952
Number of Sequences: 438
Number of extensions: 3949
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42862491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)