Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_L14
         (1260 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488...    32   1.1  
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818           31   1.9  

>05_01_0558 -
           4880811-4880996,4881098-4881178,4881247-4881393,
           4881985-4882029,4882370-4883134
          Length = 407

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 438 LRLPHRLTPRLEIPP-PHRIH*KSHKFHYLLRMHLIESMLSFKISISHT 295
           LR PHRL+P    PP PHR+  ++H      R      +LS  IS S T
Sbjct: 34  LRPPHRLSPFSAPPPEPHRLTYRTHSTSSSSRTPTAAGLLSPVISTSRT 82


>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
          Length = 743

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 22/53 (41%), Positives = 26/53 (49%)
 Frame = +2

Query: 530 HPHVPRHRLQPHFLPQRAGPRHAGRSRTRGSPILAPRRDQVLVGPKVLPVLRV 688
           HPH  R  L       RAG R A       S + A RR  +LVG  VLP+LR+
Sbjct: 12  HPHPARLSLVTSRRRPRAG-RVAAACSPSPSALAAGRRAVLLVGVSVLPLLRL 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,579,709
Number of Sequences: 37544
Number of extensions: 320268
Number of successful extensions: 789
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3899283420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)